Array 1 6884-2827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXXQ010000129.1 Endobacter medicaginis strain LMG 26838 contig00129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6883 29 89.7 32 .A.GA........................ GGCTGCGCGCACATGATGCTGTGTCCGCGTTC 6822 29 100.0 32 ............................. TCGCAACCGCGCTGATATTTCCGGGGCACGGC 6761 29 100.0 32 ............................. GCAATCTTGCCGGCCGCCACTAGAGCGGATGG 6700 29 100.0 32 ............................. CGGATTACCGCTTCTTGGGCATGTTGTGGGTG 6639 29 100.0 32 ............................. GACGACTTCTACATCACCCCTCCGGAGGCTAC 6578 29 100.0 32 ............................. GCGCAAACGTCTGGTCGCACGGCTGGCCGCAG 6517 29 100.0 32 ............................. GTGTAGGTTCGATAATCGAACCTAGCGGATAC 6456 29 100.0 32 ............................. CCCCACGCTCCCATGACACGCAGGCCATCGAC 6395 29 100.0 32 ............................. GGCGGCAGGCCGCCGAAACGCATTGCCGACGC 6334 29 100.0 32 ............................. CCGCCACCAATCCGACCACGACGGGTTGTGGT 6273 29 100.0 32 ............................. CCGCACGTGGCGCACCGCCGTAGGGGCTGGTG 6212 29 100.0 32 ............................. CAGCGGATTCATCGCAGATTGCGACTGGCATG 6151 29 100.0 32 ............................. CTGCGGCCGCTGACTTTGCCACCGAATGCCAT 6090 29 100.0 32 ............................. ACTGACATGACGACCCCCAAGGTGCAGGTTCA 6029 29 100.0 32 ............................. TGTTTTGCCTGAAAACAGGATATGAGTGTTTC 5968 29 100.0 32 ............................. GAATACGTCCTAACGAAAGCCGGCCTCGCCGC 5907 29 100.0 32 ............................. CTCGATCGAGCGGCCATCGGCCGCATCTTCAT 5846 29 100.0 32 ............................. GTGACAGGGTTCTGGCGGACCGCCCGGCAGGC 5785 29 100.0 32 ............................. TCATGGGCAGCCGTTTGCCGCGCGCCTGGTCG 5724 29 100.0 32 ............................. GCCGCCCCGCCAGCATCGCTTGCACCGCCCAT 5663 29 100.0 32 ............................. ACGGCCAGTGTTCCGGTCACCGGATATGCGCC 5602 29 100.0 32 ............................. GATGCGGTCAACTGCGTCGCCGAGAGCGGCAC 5541 29 100.0 32 ............................. CCAGCGACAACGCGCACCTGACGGATGCATGT 5480 29 100.0 32 ............................. TGATGCGGCTCATGGGCATCCGCACCCGGTGA 5419 29 100.0 32 ............................. AACCCCTACACGATCGACAACGTGCAGGTGTC 5358 29 100.0 33 ............................. CCGCGAACCGGCTAATGGAGTTCCAGAAGCTGC 5296 29 100.0 32 ............................. TTGTGCAGCACCCACCACGGAGGCGCGTCGAA 5235 29 100.0 32 ............................. GCTGATGCGCAGACTGCAACGCAGAGCATCGC 5174 29 100.0 32 ............................. GTGATCGCCGACGTGACGCATCCGCCCGCCAC 5113 29 100.0 32 ............................. CTTTGCAGGGCGCGGGGATGCGGCGGACACGG 5052 29 100.0 32 ............................. GCCCGTGGCAGTTGGCGAGACGATGCCCCGCG 4991 29 100.0 32 ............................. GCCGTTCGAGACGTCGCCAATGAGCAGGGTAT 4930 29 100.0 32 ............................. GCGCCGAGGTCTATTGCGGCGCCACCAGCGAG 4869 29 100.0 32 ............................. GCAGCGGCGTTTGTCCGTGGCACAGACCAGGT 4808 29 100.0 32 ............................. GCTATAGCCGTGATCCGCAAATACAGCGCCAC 4747 29 100.0 32 ............................. GCGATGGAGGCTTACGCTTACGGTGTCGCGCA 4686 29 100.0 32 ............................. GTCCTCTACCTTCTCTCGGGGCGGGAGTTCAC 4625 29 100.0 32 ............................. GACGCCACATCTGACTCTGCGTTGTAAATCGG 4564 29 100.0 32 ............................. GCCCGCAATGACCTGCTGGCGCGCGGCGCCGA 4503 29 100.0 32 ............................. CTGAACCACGCGCCGCAAAAGCAGATGGCAGC 4442 29 100.0 32 ............................. GCTCACATGCTCTCGTTGGCGGAGAGTGCCGA 4381 29 100.0 32 ............................. GCGGCCGCCAGCTATGCGACAGGGCTCGCCGA 4320 29 100.0 32 ............................. GCGAATGCCGTAACCGCCCGCTTCCGGGCCAC 4259 29 100.0 32 ............................. GCGTCGCACAGCGCTACCAGCGCATCGTGAGG 4198 29 100.0 32 ............................. TCACGCCACCACCAATCGACCGCAAGTGGGTC 4137 29 100.0 32 ............................. GCCACACGGTCCCCGCACACAAGCTCAATCTG 4076 29 100.0 32 ............................. CGTTGATTGCGAAGCAGGCCGAGATCCTGCGT 4015 29 100.0 32 ............................. TTACCCAATCCAGCATTTCGGTGTCTGTTGGC 3954 29 100.0 32 ............................. CAGATCATCACGCACGACAGTAGTGCCACATG 3893 29 100.0 32 ............................. GTCACGGAGGCCGAGCGTACGACGATCCAGAC 3832 29 100.0 32 ............................. CACGCCATGTGCAACGTGTATTCATTCGGCAA 3771 29 100.0 32 ............................. GCGGTGCTCGGTTCGACGTGCTTGACCGTCGA 3710 29 100.0 32 ............................. GTCCATCGACGCGATCCTGCGGTCCCCACCTG 3649 29 100.0 32 ............................. GCTCACATGCTCTCGTTGGCGGAGAGTGCCGA 3588 29 100.0 33 ............................. GAGGACGTTCCCGCCATCGTGCCGGACGTTCCC 3526 29 100.0 32 ............................. CATCCGCGATTGACGCTGACGCCATCGTGCGT 3465 29 100.0 32 ............................. CGTGCCAGCGGCAAGCCCCGCGCCAAGACGCG 3404 29 100.0 32 ............................. GCCTGGCCTCCGCCGGGAGGCCGGAGATCACT 3343 29 100.0 32 ............................. TTGGATGAGGACGAAACCGACGATGCAGACAG 3282 29 100.0 32 ............................. GCACCGGATTTCATCGAGACACCGTCTGCGAA 3221 29 100.0 32 ............................. CCCATACCGTGCAGCGCACGCAGCGAGCTGCC 3160 29 100.0 32 ............................. ACGCCTTCTCGTTGGTGACGTTGATGTTGAGC 3099 29 100.0 32 ............................. TCCAGAACGCCGGTAATGGTGGCTGCACCCCA 3038 29 100.0 32 ............................. TCCTACGTCGACCCGATCGCCGAGATGGCCGG 2977 29 100.0 32 ............................. CCAACATCATGCAGGCGGCCGACCTGTCGGAA 2916 29 100.0 32 ............................. CGCAGGGGCATGTGGCGCATGCCTGCCGGCCA 2855 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================= ================== 67 29 99.8 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : AGGTCCGACCGTGCCGGCAATCGTTCCCGTGTTCGTCGTCATCGTCCTCACCCCTGAGGCGGAGACCGTCCGCTAACGGAGTGTCTCAAACAACCGTGGGGC # Right flank : GATACTGACGGCAGGTGCACAGGATGCTCCGGGCCGCCTTCTTCAAGGCAATCGGCCCCGACAATGAGCGGTGTTGGCAGGATCGGGCACGCTCCTGTCTCATGTCGATCGCCGATCCGTCATCTTGGGGCATGGCCGACGCCGACAACCTGACCGAGCGATGCGGGGAATCCGAATCAGGCTTCCCGCGATGACCATGTCTCAAAGCCTGTCGTCGCAGGGCTGCCTCAGGGCAGCGCCGGTCCCTTGACCACCCGCGACATCGCCGCCGGCCGCAGCCAGGTCTTGAATGCGTTCCGCACCGCGTCGGGGGTCGCATCGTAATAGTGCTGTGCGCCGACATACGGCGTATCGAGCGGCATCCCCAGCCCGGCGAGGTAGAGATCCTCGTCGGCGATGTCGTCCACGCTCGCCCGCTGCATCGGCACCTGGCGCAACAGCGAGGCCTTCGCCAGCGTCAGCTCGCTGTCGGCGACCGGTGTGGTGGTCATCTCGCCCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1562-1712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXXQ010000478.1 Endobacter medicaginis strain LMG 26838 contig00478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1562 29 100.0 32 ............................. ATGGTTCCACGGGGATACGGGCAGGATTGTTT 1623 29 100.0 32 ............................. CGGAGGGCCGCACGCAGCACGGCGACCTCATG 1684 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : GTCCTCGCGCGGCTGATCCCGTTGATCGAGGAAGTGCTGTCGGCGGGTGGACTGCCGCTGCCCGAGGCGCCGGAGGAGGCGATGCCGGTTGCATTTTCCGACCCTGAGGGATTGGGTGATGCTGGTCATCGTGGTTGAGAATGCGCCGCCGCGGCTGCGGGGCCGACTGGCGGTCTGGCTGCTGGAGGTCCGGGCTGGTGTGTATGTCGGCCAATACGGCCGACGCGTGCGAGAGATGCTGTGGGAGCAAGTCCGCGAGGGCATTGGCGACGGTAATGGCGTGATTGCCTGGGCAGCTCCGACGGATGCGGGTTTCCGTTTCGAGACCTGCGGCGCCAACCGCCGTGTTCCTGTCGAATTCGACGGCTTCCATCTGGTCGCCTTCACCCCGGAGGCGGCTCACCCGACGGCATCATTGCTGACCACCAACGACAGGCGTAAAAAGCGGTAGGTTTTTTGACAAGAGAATCAGTAAGTTTTTACAATCACTTCCATGAAGA # Right flank : TAATTGTGAACGCTTGGACTTGTCATCCCACAGCGTTCCCCTGTACCGCCCGCAGATTGTGAGACACCGATCTGAAGCCTACGCGGCGACGGCCGCGAGTGGAAGCTGCGCGGCGCGGATTGCGGCCGGTGGCCGGAACCCGTGTCGCTCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //