Array 1 44229-42543 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYJX01000025.1 Streptococcus agalactiae strain GNUCH_SAga_9 25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 44228 36 100.0 30 .................................... ATGCGGTCACTCATATAAGACATCTCCTTT 44162 36 100.0 30 .................................... CCCAGTTGCAATGACTGCGCCAGAAGTCGG 44096 36 100.0 30 .................................... TAATGGTTTATCTCTTTTTTCATCTGTTAT 44030 36 100.0 30 .................................... AATTATCAATGTTTACAACTGTTTTAGTTT 43964 36 100.0 30 .................................... TAAAATCCTGAAACAGAATGGGATTGATAT 43898 36 100.0 30 .................................... AAAATCAGAACGCCTTATTTGAAGCAGTTA 43832 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 43766 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 43700 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 43634 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 43568 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 43502 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 43436 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 43370 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 43304 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 43238 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 43172 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 43106 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 43040 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 42974 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 42908 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 42841 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 42775 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 42710 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 42644 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 42578 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //