Array 1 1606527-1606294 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP005986.1 Acidithiobacillus caldus ATCC 51756 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 1606526 28 100.0 45 ............................ CGCGTCCACATTGCTGCGACCTCGCAAGAAGCGCGGGTGGCACTA 1606453 28 100.0 39 ............................ TGCTCTGTTTCGCTCATGCTATTACAGTACACTGCTGAG 1606386 28 96.4 37 ................C........... ATTGGCTCGTCGTCAATCCGGGCGCAGAGACCCTATG 1606321 28 78.6 0 ...G............C..C.A.A...A | ========== ====== ====== ====== ============================ ============================================= ================== 4 28 93.8 41 GCCATTGCAGGGGCTTGGTACTTGCAAG # Left flank : GGCGCTGCATTGGGCGGCTTGCAAGTGTGGGACGGCAGTTTTGCATTTGTCGGGAGAGGAAACGGTCAAATCCTGTGCGCTGTGTCGCGGCGTGTCGATGGTTACTGACCCAGAAGATGGCCAGATGCTGTATTGCGAAGACTGCGGCAGCACGGTAGATCGCAAGAAGAACGGTGCGGCCAATGCCTGGAAGCTGGCAAAGGAAAATCTGGAGCCTTTGGTGACGGAGTATTGGGAAACCGTGCTGACCAAAACGCAGGAAGCGGCGCAGCGTAAGGTGGAAAAGGCGCAGAAGATGGCGGCGGGTCGGAAAGCGCGTGCAGCCGCGCGAAAGGGAGTCGACGGCGCAGAGTCGGCAGATTCGCGCGTGTGAGGAATCAAGAGGTTAGACGATTTTATGCGGGGTATGGGCGAGCCCGTTGGTGTTGTGGATGCCGGTTCGCGGAAAGTGGCAGGAAAAGAGTTGCAAAGCCACAGGATGTGGAGGTAGAGTAGCAATA # Right flank : GCAAGAAAGTTTTGACACGCCAGAGTGGAATTGACGATACTTACAGATAAGTGAGTATGCTTCCGGATATTCATGCCCAGCTCCACCCCAGAAAAAAACCGTGAACACGTCAACACGCATCGCGCCCGGATGCGCGAGGCGGGATACGTGCTGCTGAGCAACGTCTGGATCCCCCAGGCACTGCACAAGGCCATTGCCCGACGGGCTAAGCAGGAGAACAAACCGATCTGGGTGATCGTAGCCGAAGCCCTGGCCAAAGCATTTTCTGAAACATAGAAAAAGGCGCTCTGGCTTGACAGTCCGGGTTTGCATTTACACACTTACAGGTAAGTATGTTTGGTGTTTGTTTTGGATACGGCACCAAGGGGATAACAGGAGGTTCCATGTATCCACCGCTGATTCGGCGATTGTTGCAGGACCGGGGGGCGGACCCCGACGACGCGCTCGATCTGTCCACCATCTCGCCCCCGTTGGGGCCGCAAGGATTCCTGGGCATGAAG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATTGCAGGGGCTTGGTACTTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1830737-1831003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP005986.1 Acidithiobacillus caldus ATCC 51756 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1830737 28 100.0 33 ............................ GAGGTGCAGTCGAGGCTCCCGCTACCAGCCGAC 1830798 28 100.0 33 ............................ TAATGATGCTGAAAAGTTGGGGCAGGTCTGGTC 1830859 28 100.0 33 ............................ TCCTTGCAGTCCGCATTTCGCATTTGCTGCGTT 1830920 28 78.6 27 T......T...A............GG.T TCGCATTTCGCATTTGCCGCGGGCATG A [1830930] 1830976 28 82.1 0 .............CG.......G.T..G | ========== ====== ====== ====== ============================ ================================= ================== 5 28 92.1 32 GTCGTCCCCGCGTGTGCGGGGGAAATCC # Left flank : CTTCGGTGGACGAGCGGGATTTCCTGTTCGCGCCGTACAGGGACGCCATCGTGTTCCGGTCCCGCTCGGAGCCCTTGCCGGCCACGCCGGAGGTCTGGCGGATGCGGTCCCTGCTGGCCCCGGTGATGCGCCGTGAGCATCGGGAGCGGGTCGTGAAGCCCAGGGAATTTCGCGGGTGGCTCGCGTCCCTGCTGGAGCGCCACGGCTGGGTCCTACGCTCCATCGAGAAGGTCGAGTCGATGGAGATGACCATCCGTCACGGTCGACGTCTCACGGTCGTCGATACGGTGTTCACCGCGCAGGTGGTGGATCGGGAAAACGCCGACCAGTCCTACCGGAGCGGCATCGGTCGGTACAAGGCTTTTGGCTGCGGAATGCTGATTCCGCAGGGTTGATCGCGGCTTTCCGTCGATCGGCGGAAAGCGAACCGTTCTTTCAAAATCGAGCGTGCGTTTGTCCGATAGGATTTTCCTAACGGAAACCGTGTGTTGCGCAATAGG # Right flank : GCACCGAAATCGGTGTTTTTTGTTCGTTTGATAAGAGGAGACACGATATGTCGATGTTGGAAACTCTGGATGTTTCGGGAAAACTGCTGGCCGTTTCGCCTATCGCGGTGTCGCCGCCCGGAGCGGCGTTTTCGTCGGACGACAAGGGGGCACCGCAGCGGCTTCCTTCGGTCGGCAAGAACCGCTACCTGCCGGCATCCACCTTTCGTCACGTCCTGCGCTACGGGACCATACGGGTGGTGCAGGAAGCCATGAAAGCGCAGGGGAAAAGCTTGAGCCTGGACGCCCTGCTCATGCTGGACAAAGGGTTCTTTGCGCAGCGGAAAAAGGACAAGGGAACCCTCCCAGGCCGGAGCAACGGCAAAATGAAAGCCAAGGACGTCCTGCGCATGGAACAGGAAGTGCGGGAAAAGAACCCGCTGCTGGGTCTCTTTGGGGTGTGGACCATCCCGTCCATGCTGCGGGTGCGCAACGCCTTCCCGATCCCCAACGCGCAGGGG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGTGCGGGGGAAATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1832065-1833061 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP005986.1 Acidithiobacillus caldus ATCC 51756 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1832065 28 100.0 33 ............................ GTGGGCATCTCCCAATCGCGCGCGCAGGTGTGC 1832126 28 92.9 33 .......................G...T GGCTTCGAGACCGACGCGACCGTGGTGCAGGCC 1832187 28 100.0 33 ............................ GGGATCAGCGGCGTACTCATCCACTTGTGGGCC 1832248 28 100.0 33 ............................ TTACAGTATGGCGCGGAACGCAGCCGGTGGCGT 1832309 28 85.7 26 ..........T........T.....C.T GATCACCGGGACAAAACCGGGCGGCG Deletion [1832363] 1832363 28 89.3 32 ...........A..T..........C.. GCTCCGGACTCCGCTCGTACCCGTCATTCACC 1832423 28 96.4 33 .G.......................... TCATCGCTATACCAATGCGCAAGGGGCGGACCC 1832484 28 96.4 33 .G.......................... CGCCTTGAGCTCCCTGTTCCGCCATGTGGAGGA 1832545 28 96.4 33 .............A.............. GGGCGCTGCGGTGGGGGATGACATTTCCCAAAA 1832606 28 96.4 33 .............A.............. GTACGCGGCTCATGCACACCATTCCAGCGATGG 1832667 28 100.0 33 ............................ GAGAAAGCAGGAGATTGGAGAGCGTTCTCTATT 1832728 28 92.9 33 ..........T..A.............. CCGAGCCAGCACCCGACTCTTGATAGCGAATCT 1832789 28 85.7 33 ..A..........AT........G.... GCAACCGTACCGGACCCCGCGCCGCCCACGCTA 1832850 28 85.7 33 ..A..........AT........G.... AGTCGATATCAGCGGAAACGCTTCGGACATTGC 1832911 28 82.1 33 .C...........AT....A...G.... ACAAGCGGCCAGGTCTCCCGTCATGCTCAAGAA 1832972 28 96.4 34 .............A.............. GTACACCATGGCGCAAATAATCGACTTTCTGGCC 1833034 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 17 28 93.9 33 GTCGTCCCCGCGTGCGCGGGGGAAAACC # Left flank : CTTGACCAAGGAGGATGCGGAGGACTATCTCCAGCGTCTCGACGACTGGTCGGAGGCCGACAAGGAGACCACGGGCCTCAAGCACATCAGCGAGCGCCCCTGGGAGGAGATCGTGGCTGGTGTGGAGTGCGAATGGGGCTACCAGATCCACAGGTTTACGCCCTTCCAGTCCGGCGCGGTACTGGCTGGTCTGCGCTACTTCGCCAGCGATCCGGTCATCGGTGCGCACAAGGCGGTCGGGCGCGGTGAGCTGGCGATGGAACTGAACGCCAGCGTCATCCGCCAGGATATCCTGAACGGCCCCCAAAGCGCGGAAGCCGGAACGCTCACCCTGCGGCGCGGAGAATTCCGTGTGGATGGTCTGCTGGCCGAGCATCTATCCGAATTCGACCGGCTGGCGAAGGCGGGTTTTCCGGGGATGGATTTCCATTGCCTGCCCGCGCTGGTGGAGGGGGAGTGAGTGTGGAAAATCGCATAAAAACAGAGTGTTGAGAGATAGA # Right flank : CGGAACCCGCGACGGGCCTTTCAGGCCGTTTTCCGCCGCAGGGTTCCCTCGTCCTTTCCTCGACAGACCGCCCGGCCCGGTTTAGCCAATCGCCCACGAATCCAGGTGGGGAGGTCCATGTCCCGCGTGAGCATTATGCCTTTGGGGCTGTGGCCCAGGTGAACGACCGGCGATTCCGAAAGGGAAAAGTGGTCGCACTCCACCCAACGGGCGAAGGCCTGTTGGAAAAACCGGGAGAGGAACCGGATTTTGTCCCGTTGGCCGATCCGGCGGAAAAAGGCCGCGTGCACCTGCAGGTATTCCTGGTCGTGCTCGACCAGAAGCATCCCGTAAACCTGCAGGGGCTGGCCTTCGGCGTGGGAAATGCCGGCCCAGGCGGACCGTGTTGCGGACGTTTGCCCGAGCACGCGAACACCGTTTTCTTCGAGCATCTGCACTCCCCGACGATACGGCAGATGTACCCATTCGTGATGCGACCGCTTTTCCATGGTGGCCTCCTT # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGCGCGGGGGAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA //