Array 1 25509-26635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJWK010000010.1 Escherichia coli strain SA27 NODE_10_length_188017_cov_28.113582, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25509 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 25570 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 25631 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 25692 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 25753 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 25814 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 25875 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 25936 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 25997 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 26058 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 26119 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 26180 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 26241 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 26302 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 26363 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 26424 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 26485 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 26546 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 26607 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGACGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1100-217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJWK010000022.1 Escherichia coli strain SA27 NODE_22_length_74192_cov_26.919949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1099 29 100.0 32 ............................. TTTTACCCGTCGCGGTGGCGGGAGTTGCGGAA 1038 29 100.0 32 ............................. GCTAGACAATTACAGAACGATGATTTCCGGCG 977 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 916 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 855 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 794 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 733 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 672 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 611 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 550 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 489 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 428 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 367 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 306 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 245 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //