Array 1 827533-830035 **** Predicted by CRISPRDetect 2.4 *** >NC_012588.1 Sulfolobus islandicus M.14.25, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 827533 25 100.0 39 ......................... CTTACTTTTTCATGGCACATTCTTGACGCTTGACCGAAC 827597 25 100.0 38 ......................... TTTTTCGCTAAAGTGAGTAAATCTAGGTAATGCTTCGA 827660 25 100.0 41 ......................... GTAATTTTACTAACTCGTTACAAGCTTACAATCTATATCTG 827726 25 100.0 35 ......................... TTTTTTAATATTTTTCTAATTTCATCACTGATTTC 827786 25 100.0 41 ......................... CTTTCGTCTGCACCCATTTTTTTGCTTAACTCTTCTAGCAT 827852 25 100.0 35 ......................... AAAAAGTCCACGCTATAATCCCATGAATGTTCGAT 827912 25 100.0 38 ......................... ATCCGTATATAGTAAATAATGCCACCTAAATCTATTTT 827975 25 100.0 38 ......................... TTGTCTAAGCTAAAAGCTAAGCAAAAAGCTTATATACT 828038 25 100.0 40 ......................... AATAATTTCTTTGCTTTTTCTTCCTCTTGTTGTAATAATT 828103 25 100.0 39 ......................... ATAACAACTTCGCCTCCCCGTCGTCCTTAACGAACTTCA 828167 25 100.0 38 ......................... TTTGTATAATAGAAACTTGCCTTCCTAAATCTCAGTTT 828230 25 100.0 35 ......................... AACACTATTCTCTTCCTTACCTCTTTTACGTCCTC 828290 25 100.0 36 ......................... AAGTTAGCCGAGGTAGTGATTAGCCATGGATAGATT 828351 25 100.0 39 ......................... ATTTAAATTTCCAGTACCATAAGCAACTGCTTGTCTATT 828415 25 100.0 38 ......................... TAGTATTTATAGCTTCTTTTATCGTAAAAACACCTTTC 828478 25 100.0 40 ......................... GTATAGAACAACCACTGCCTAGCACTGTTTGGGTGTCCAT 828543 25 100.0 39 ......................... TTAAAATTAGATGATTTGTTAGGCATGTTTGGCTATCCT 828607 25 100.0 39 ......................... CCAATAAACCCCTACTGCTTACGTGGCTTAATACGTTAT 828671 25 100.0 42 ......................... TTATATCAATAATGATGGTCTTATCACTGCTGTTCTTCTTCC 828738 25 100.0 38 ......................... ACGAGTTTGTAGAGTTCAAACGTCTGGTTGAGTATGTT 828801 25 100.0 38 ......................... GATTTATCAAAAAGCGGAATAACGAAGACGCCAAATTC 828864 25 100.0 38 ......................... TTCAAAGCTCTAAGCAGGGAGTTAGCCAACGCCTTGTT 828927 25 100.0 40 ......................... TTTATTATATATAACAATACTATATCCTGCGTCCTTTAGT 828992 25 100.0 37 ......................... TATTCTAATAATGGAAAGCTACTATGATTTTGTGCAT 829054 25 100.0 40 ......................... TAATTATCAATAATCCATTGAGTTATTGCATAATATCCTT 829119 25 100.0 36 ......................... ATATCTTGACTCATATTTACACCCGAAAAAATCAAT 829180 25 100.0 37 ......................... TTGATATCTAGGGCGGGCGTTAAATTCGTAGAGGCGG 829242 25 100.0 40 ......................... ACGTGTTATATCTATATCTGTCTTCAGCATGTAACGATTT 829307 25 100.0 38 ......................... TTTCGCTTCAGAAAAGTCACTTTAGATCACTTTATATA 829370 25 100.0 37 ......................... CGTAATCGTTCCAACGGGCAATAATTCTATATATCGT 829432 25 100.0 38 ......................... GAGACTTCTACATCTTGTCCGCTCATCTGTGTTCTTTT 829495 25 100.0 38 ......................... AAATTATATGGCCTGAAGTGGGTGTTAAGTACGACAAT 829558 25 100.0 39 ......................... GAGGTTGGACGGCTAACGAATATCCCGCATTAGGCGGAT 829622 25 100.0 40 ......................... TTCAAACTCCGGGTCTGTCTCTTCGTAATTAATTTTCTTT 829687 25 100.0 36 ......................... TCTAATTTGAATGTTATAACCCTGTTCATAAGTATT 829748 25 100.0 44 ......................... GAACTATTGCACCTTTATAAGTATCCTCTTCTTCAGTTTTCTTA 829817 25 100.0 39 ......................... AATACATTAGCTATACTTGGATATCCAAGATTTATACCT 829881 25 100.0 40 ......................... CTTTTGCGTAATAAATTTATACGTCCAATCGGGCATTCTT 829946 25 100.0 40 ......................... AACATGCTCAAAGCAAGTGATGGGATGATTACTAACCTAC 830011 25 88.0 0 ...C.....C....C.......... | ========== ====== ====== ====== ========================= ============================================ ================== 40 25 99.7 39 GATTAATCCTAAAAGGAATTGAAAG # Left flank : AAAGATAGATTAAAAAATTAACCATAAAAGAGTTCCTTATTTTTTGATCGATATTTATTTTTTATTTGGTTAAAAAGTTTTTACTACTACATTTCTGGATCAGACGTGGAATTAACGTGATTATAAGTCCCTTTAAAAGGATAGTTATGCGTTAGAATGAAAAACAATTATACTAAGAAGCGCAGTTACTAAATTATTGTTTACCATCTCTAACGATTTTATAATAATAGAATGACTAAAATGTTACCTAAAAGTTCGTTCTTATGAAGTGGTTTAAAAGTGTCGGAGTTCGAGTCTCAATGCGACCGAAACGAATCTTTTTCGTATAATTGAACGTTTATAAATAATGGGGTATATTTCAATTGAATGGTAAATCCTTGCGACCAAAAATTGTTAAATTAATTACAACTAGAATCGGTCACATGAGGAGTAAAGGATAATAATGAAGATTTATAAGCAAGAAAGGAGTAAAGTAAGATAAGAAGTATAAAAACACAACA # Right flank : GTAATAAACGATTGTTTGACGACATTATTTACAGGGAGTGTTCTCGTGCAGTCATCTTATTCGAGAACATATAGTAAAATTATATCAGATTTTGTCTAATATTCTGTACTCCCTTCCGGTAAGCCTCATTCAAGGGAGATGACTCCCTTGAATAGATTACGGGATAAATGACGTTCAACAAGGCAAGACTATAATCAACCATCCTCCCACTCCTGCTCACAGCCCTAGTATCCCTAGCTAACCTAGCCAAGTGGGCCCTACAGTAAGAGTTATAACTCTCCACGGTGTGAGTGTACTTTTTGCTCGCAACATGATTATCAAGAACTTGATAAACAGAGTAATCATCAGTATAATTAACCTCACTCTTAGGCAGAGAACTCAACAGAAAGCTGAAAGTCTTGTAATCTCTATTACCCGTAGTAAAGAAGGGTAGACCATCAACCAAAGCATTCCAAATCTACACCTCTTGGGACCATGTCTAACTCTAAGGTAAGTCCAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 849989-848255 **** Predicted by CRISPRDetect 2.4 *** >NC_012588.1 Sulfolobus islandicus M.14.25, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 849988 24 100.0 37 ........................ TGCAAATGCCCCTGCTCCTCCTTTACTTGGTTCTACT 849927 24 100.0 42 ........................ GCAACGGAGTACTGGACGGGAGTGATAACGGTGACAGAATAT 849861 24 100.0 38 ........................ ACGATATAAAGTGATATATATCACTTCCGAACACGAAA 849799 24 100.0 40 ........................ GTTGTCTTTTATGAGCTTGCAGCAATATCAGGTAATCCAG 849735 24 100.0 38 ........................ TTTGAGTAATCGTTAACTTTATATAGCTCATACTCATA 849673 24 100.0 38 ........................ CATGATATAGAAATACCTAATGGTTATCGTCCTTTAGG 849611 24 100.0 37 ........................ CAAAATTCAAACTTAGGATTCTACGAAACTGAATTAA 849550 24 100.0 40 ........................ TTACTACAAAAATTATATACACCTCAAGTAATAAATTTTC 849486 24 100.0 41 ........................ ACTATATTCTGCCATAACTTAATAAGATCAGTAAATCCAGA 849421 24 100.0 39 ........................ TTTATAGACATATTTACTTTTAGTGCAACAAGTTCTGGA 849358 24 100.0 36 ........................ ACTTTTTGCAATTGTATTTGTTGTTGTGATGTTGAT 849298 24 100.0 38 ........................ TATCAAGTTTTAATATTATTAAATAACCGTTGTCGACA 849236 24 100.0 40 ........................ TTTAAGGAGATGGTTTTATGAAAATTGCCGATAAGGTCAA 849172 24 100.0 41 ........................ ATAAGCAAATTCCTCATCTATCATTATATTGTGTTTAATAT 849107 24 100.0 39 ........................ AATAGCTATGGACGAGGCTCATAATTACGTAGGAACACT 849044 24 100.0 41 ........................ GTGACAAATAGCTATAGTTACAATATTCAATACAGTGCTTC 848979 24 100.0 39 ........................ CGTAGATCTACAGTCTCTTCCTTTCTTGTTTGCTCTTCT 848916 24 100.0 38 ........................ TTACTGCATGATAGGCATCTAATATACCCATAAGTTAA 848854 24 100.0 40 ........................ TATTCGACAATAAATATCCAGGGGGGAGGAGTAATAGAAG 848790 24 100.0 38 ........................ AAAAAGAAGAAAATAGTAAATAACATAGTACAACAAGT 848728 24 100.0 43 ........................ TGCAATTATATTAGCATATGTATTTGCCAATTGAGGATCCTGT 848661 24 100.0 40 ........................ TAAGCGTATTTTTGATAAGCATTAGCCTCATCTTCAAATA 848597 24 100.0 41 ........................ ACAACTGAAGGCGTCGCTGAAGCTATCGGATGGGCATCTAT 848532 24 100.0 39 ........................ ATAACCGCATCAAATCCTTGCAATAATTTTTTCTGTTCT 848469 24 100.0 39 ........................ CAACCTGAGTTGTACTTCTGCAGATTTTGTTTATGTCTT 848406 24 100.0 42 ........................ ATCTCTTCAGTCCGCTTTGGGTCGAAAGCGGACAGTCCTAGT 848340 24 100.0 38 ........................ GCACCAGTAACTACTTCACAGTCCCCTCTTCCAGTATA 848278 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================================== ================== 28 24 100.0 39 GATAATCTACTATAGAATTGAAAG # Left flank : CTATTTCATAAACTTTTGGAAGAGGGTAGTTTAACCTTGAAGTTTGAGCTTTTAAGCTATCTATTGCAGTCCTAGTTCCAGAGATAATTGGAGAGGGAACAACGATTACAAGATTATCTTCTTTCTGTGCAGAGGTTTCGTTTAGAAGTCTAAGCAGAAAAGTTTCATTAAATCCCATGGTCACAAAATATGATTTCATATCATAAAATTGGTATTACCAACTCATAAATCTTTCTATAACTTAAGAGCTTGTAGCTGAGGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAATGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCA # Right flank : TATACTATATTCTATGACTTGTTTGAAATCTAAATCTAGGGAAGCCGTATGGGAAAAGACGAAGTCCTAATAGATATAAGTACGTTTATATCGAATAAGAGAAGAAAGGGGAAAGTTAGTGTAGTAACGCTAATAGAAATTATGGAATGGGCTTTAAGGAAGTATAATGAACATAGTAAAAAAGGTGATAAATTGAGGGCTTTAGGTTACCTAAATCTCATAACCTCACTTCCGCTAACTGTTGATGAAGTAATTGAGATAAGAGGTGATGAAATAAGAGATCTAGTGTATTACGTAATTGAGAAAAATTTAGATCCTACTGATGCTTATTTTGTAGTTTTAAGCAAGAGGTTTAAGATGCCTATAATTACAACGGATAAGGATTTCGAAAGGATTAAGGATGAAATAGAAGTTATATACCCATGAAATAACGGTTATGTAAAATCTATGCTTTGTGGGCTATATTTTATGATAGCCAACTAGAAGCATAGAGGTATAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 854586-861943 **** Predicted by CRISPRDetect 2.4 *** >NC_012588.1 Sulfolobus islandicus M.14.25, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 854586 24 100.0 40 ........................ ACACAATCGGCATCTACGCAAAATAACGTACTGGGGACAT 854650 24 100.0 37 ........................ GCACCAGGGTGTTGTGCTCGTCCAGTGCGATCCATGC 854711 24 100.0 38 ........................ TCGCCATCGTGGAAAGCGACGCCAACGGATACTATACC 854773 24 100.0 41 ........................ ATTATACTTTCCTTATTGACGCTTTCCAGTGTAACATCTCT 854838 24 100.0 37 ........................ TATGTAACAAGAATATCAGACCTCCTAGGGATTCCGA 854899 24 100.0 39 ........................ TTTTTTCACCAATATTGTTATTGTTGAACAAATATTTAA 854962 24 100.0 38 ........................ TATATTACCGTCATTCGCTCTTCTTATCCTCAGACCGT 855024 24 100.0 42 ........................ AGTAAGATGGCAACATAAAACTTTCCTTTGTCATTGAGTTTG 855090 24 100.0 39 ........................ CCTAAGATTGCTAATGCGAGCAATAATGCTAATGGGCTT 855153 24 100.0 38 ........................ CAAAATGGACAAATAGCATTAGGTTGATGAAAATTACT 855215 24 100.0 39 ........................ TTACCACCATTTATTTTGCGATATTTGATGGAAACTGGT 855278 24 100.0 40 ........................ TGCAACCGCCCTTAGTTTTTCCCTAACCAGTTAGACAGAA 855342 24 100.0 40 ........................ GGGGAACGTACGGACAACATAGCAAAATATTCTACATCGT 855406 24 100.0 41 ........................ TCGCCTATCTGCGTTTCGACTACCACTCCGGCATATATCCC 855471 24 100.0 38 ........................ ATAAAGACGCCAACTGGTACCATAGTAAAGAGATACCA 855533 24 100.0 39 ........................ AAACCGAAGCCGGCTGCACCCATGCCAAGTGCAAAAACT 855596 24 100.0 38 ........................ TTCCACCCGTTGCTAGGGTTCCATTGAACGCTTGCCAA 855658 24 100.0 38 ........................ TTAGATAAAGATATAACGTTGATCCGCTTCCAGTGATT 855720 24 100.0 37 ........................ AAGCCCAGCTCCTATGTTCAGGGTTGCGCTATCATGG 855781 24 100.0 39 ........................ ATAATACTCAAAATGTTTATACAACACATGTGATGCGAT 855844 24 100.0 39 ........................ TTACTAGGGGATAATAAACCAGATTTTGCTAATATTTCT 855907 24 100.0 40 ........................ GGTCATACCGCCTTTGCCGGAGCTTATTATTCATATGCCG 855971 24 100.0 41 ........................ CTTACTGCAGATACATAGGGCTTCCTTATCCTATCTTAACA 856036 24 100.0 39 ........................ TTAGGAAAAGAAGAAATGTATCATGTCGGCACTGATGAA 856099 24 100.0 42 ........................ TTCGAAATAATATATTGTGTAAGCAATGCTAGATACTGTGAA 856165 24 100.0 40 ........................ TTAAAAAAGCTATAAAAAACAATCTACAAGTATTACAACC 856229 24 100.0 40 ........................ TTTCGAAGTTTGTAAAATTAATCTTTTTACAAATAACCAG 856293 24 100.0 39 ........................ GGTATTCCCATGTTTCTCACTCTGAAGTTGAAATTCCCT 856356 24 100.0 44 ........................ AACGCAAAATAGCCTGGACCCCCCGTTAAAACTCCTCCGCTTAT 856424 24 100.0 39 ........................ TTGTACTTAATTGCTGTATAGGGTATATCTTGCCACTTG 856487 24 100.0 39 ........................ GTAATCATGCCAACGGGCAATAATTCTATGTAACGTAAA 856550 24 100.0 37 ........................ TATAAAATTTTTGCTAAAATTTTATTTGAAAGATGAA 856611 24 100.0 45 ........................ GTACATTTTGCAATTGATAGGGGGAATAAGCAAACGGAAGCTTTC 856680 24 100.0 40 ........................ TTAAACCATCAAGATATAATTTGACTTTCTTTTTATTCCA 856744 24 100.0 41 ........................ TATAGAGAAAATAACTTAACAACCATATGTAAAAAAATGAG 856809 24 100.0 39 ........................ AAATTAATCCCACCTTCTCTTCCTAGAGCTATAGGATCT 856872 24 100.0 39 ........................ AACGTGAGCCGTTTAGTACCAGCACTTTAAGAATTATGT 856935 24 100.0 37 ........................ ATCTTCCCCCTATAAACCCCCCAATTCCTAATCCATC 856996 24 100.0 38 ........................ GATGTAATTGATAGGGACATACTAGGTAATAGCACCGA 857058 24 100.0 38 ........................ CAGTTGATGGGGAGAAGAAAGAAGATCTTCTTTTTTTA 857120 24 100.0 40 ........................ CTACTTTAAATGTTACAACTCTGTTCATAAGTATTACTCG 857184 24 100.0 39 ........................ TATCTATCCAATATGTCGTACCAACACTAAGACCACTAA 857247 24 100.0 37 ........................ TGAAATAAGCGAGGAAGAAGTTGAACGACTAGTACCG 857308 24 100.0 39 ........................ ATTGGCACTGAGGGCTATTTTGGATGAAGAATTCAATAT 857371 24 100.0 37 ........................ TATATTGCCAAAAATCACCTACAATATCACCCTCCTT 857432 24 100.0 38 ........................ AATGAAACCAGTTCGTAATGATGTAGCACTTTCTACGA 857494 24 100.0 35 ........................ TTGTATTTATGTCCTCCCCACTCATATAGTATATA 857553 24 100.0 37 ........................ CTCCTTGCTTGCTCCTCCTTTTTACCCTATTCACCCC 857614 24 100.0 40 ........................ ATTATTTTGAAATATACTAAGAACGTCCCGCTACCACTAG 857678 24 100.0 39 ........................ ATTTTTGCGTATAATTACAATAGAAATTAGTCTACCTAA 857741 24 100.0 45 ........................ TAATGGAAGTTGGCAAATAGATATTCCTGTGTTACTTGTGTTATT 857810 24 100.0 40 ........................ TCTAATCCTACTCTACAAATATGCTGCTGAAGAAGAGTTG 857874 24 100.0 39 ........................ TCAACATTTACACTTCTAGCATCTACTATGATGCTATCT 857937 24 100.0 38 ........................ ATATAATCGATTTTTGTCTCATTGTTGTTTACAGTTAT 857999 24 100.0 42 ........................ AATAGAATGTATAATGCTAAAGCTAAGAGAGCTAAATATCTA 858065 24 100.0 38 ........................ ATATACGGAGATTGGATAGATGATTGTTGTGTCAAGTA 858127 24 100.0 38 ........................ GCTATACCGGCGCCATAAGGAGAGCTTGGACTGGATGG 858189 24 100.0 40 ........................ GCAGCTCCTCCAATTGCTAAAATTTTGCCCGGTGTTGTGC 858253 24 100.0 40 ........................ CTAACTTTGCCAACTTGTTCTTTAACTCTTCATTTTCCCT 858317 24 100.0 35 ........................ GCGGTTGTGGCGTATAAAACATACAAGTCTGACTG 858376 24 100.0 38 ........................ TATCCTTACATGATCCCTCGTAAAGTAACGTTAGCAAA 858438 24 100.0 41 ........................ TCTGCGTTAATTGAAGGACTATTAACCGTTTGGCCTTACAT 858503 24 100.0 41 ........................ TTAGTGCTTACAAAATCACTAGCAATGGGAGAGATACCATA 858568 24 100.0 40 ........................ ATATTTACTCCCTTTATGAAACCACTTAAATACGCTATCT 858632 24 100.0 40 ........................ TCAAAATATTCAAGTGGTTCTGATTTGTATGCTTTTATAC 858696 24 100.0 41 ........................ GAAAATTTTTAAACCCCCAATTCGTTCTTTAGCTTATGAGT 858761 24 100.0 41 ........................ GAAAATATACGACAATTGCTAACAAATAATAAAGATGACTT 858826 24 100.0 38 ........................ TATCTAACAGTAATGGGAAGCATATCCTCTTATTCCTA 858888 24 100.0 38 ........................ ACTAAAGTGCTATAGTGACCTAAGTGAAGATGAGAAAG 858950 24 100.0 38 ........................ GATACAATTGCGTTAGCTAACGCTTCTAAACCGCTAGT 859012 24 100.0 38 ........................ TACCCTGCATCATTCTCACCACTTCCTTAAGAAGGACC 859074 24 100.0 39 ........................ CATTATATACAATCTTTAAAAGCAATTGTATGAATAAAA 859137 24 100.0 38 ........................ AAATATCCTGGTTGCCATTACGTACCACCTCCACCAGA 859199 24 100.0 38 ........................ ACTGCTTGCTGATCAATAGCAAAGAAACCCTCTGGTTT 859261 24 100.0 42 ........................ AATATGCCATGAGCAAAGGTAGTATAATATTTCTACTTTCGT 859327 24 100.0 37 ........................ TTAGTATTATTGTACGATCGCGAAAGGACAAGAGAAA 859388 24 100.0 40 ........................ AGATTATCTATATTAACGTCAAATCTGTTTAAGTTTTCTT 859452 24 100.0 38 ........................ CTTAGGTCTTTTTCAAGTTCTGGTTGAAACCGAAATCG 859514 24 100.0 39 ........................ TGTAATTCACCTCTAAATATGAAAGTTTTACATTCCTTG 859577 24 100.0 38 ........................ ATATTTTTACTTCAAACATGAAGACCCATTATTACAAC 859639 24 100.0 40 ........................ ATAACCTTTATTGGAAATGGCACTAGCTCTCTTTTCTTTA 859703 24 100.0 40 ........................ TTTATATAATGCGTCGTCTAAAGTCTCATCTATACTAGCT 859767 24 100.0 41 ........................ ATGTAAGAGGTAGGCCCTCATCCGTAAGTCGGGCCGTGGGG 859832 24 100.0 40 ........................ CTTTCCCGTCTCTAAGGTAACGATATTCCGGGACAATGTA 859896 24 100.0 39 ........................ TCTTCAGAGTGTTGGGGGCCGATAATATGGAGTTATCTA 859959 24 100.0 39 ........................ CAGATTTCTTCTTCGTTCTCAGAAATTTTGTACTCTTGT 860022 24 100.0 39 ........................ AACTATGCTACCGATATGTCAATAGGTCCTGTGTTTCAA 860085 24 100.0 42 ........................ ATTTTATAATAGTTGTATATTATTGACTTTACTTGGTTTTGG 860151 24 100.0 39 ........................ ATTTAGAATACTTGCGAAATTACCAGAAGTTACCTCATC 860214 24 100.0 37 ........................ AAAGATATAGTGGATTCGTTAGGCATAAAACCAGATG 860275 24 100.0 40 ........................ TTTCCACTTGTAATTAGTTCATCAATTTTCATAGCTAATT 860339 24 100.0 40 ........................ GATCTAAAGTGTGTAAATACATATTTATATTTTTTCCGCT 860403 24 100.0 42 ........................ ATTTCAATATTTATCTCGTTTATCGGTATGCTGTCTTGTGGT 860469 24 100.0 39 ........................ AGTACCGCCTAAATACCTCAGGAAATTCACGGCCACAAA 860532 24 100.0 38 ........................ ATAGTAATCAACGTGAGTACTGCACCCGTCGAAATTGA 860594 24 100.0 38 ........................ ATATACTCTAGTTACTGAAGGAGCGACACCGAAAAACA 860656 24 100.0 40 ........................ TATTTTTGTAATCACACCTATGTTTTCAAATCGGGGGTTT 860720 24 100.0 40 ........................ AACTATTTTTTATACTTAAAGCTTCTTCTTTATCTTTTAT 860784 24 100.0 39 ........................ TAGTGTGTAATCTTCATAAGTTTCTACTTTCTTCTCCTT 860847 24 100.0 40 ........................ ACTCCTCTTCTTAAAAGCTTATAACTGCTATTTTAAATAG 860911 24 100.0 39 ........................ CACATCTCACCTTTATCTATAACCTTTAAGACGTTAATG 860974 24 100.0 37 ........................ CAAAGATGACCCTACACCCCACACAACTTCACTCCCC 861035 24 100.0 38 ........................ GGTGATTAGATGGCAAAAACAATTAGGAACCCCGAAAC 861097 24 100.0 39 ........................ TTTCCCTGGTCGCAAATAGGGTATGTTGGAATAAGAGGC 861160 24 100.0 39 ........................ ACTATTGCTATAAATCCTACCGTTAAAATGTCAAACGCT 861223 24 100.0 42 ........................ AAGAACTTAAAGCCATAATTGTTCGCATTTAGATTTTGAGCT 861289 24 100.0 38 ........................ CCCAATGCTAATCCGCCACCTATTGCACCGCCGTATAG 861351 24 100.0 38 ........................ TATAGATAACTGTTTCATCATCTTCATTCTTGCAATAT 861413 24 100.0 40 ........................ TTTGATGATAAAGACAATGGCCCACCGTAAGGCTGTATTA 861477 24 100.0 38 ........................ AATCCCACGCGTGCAACAACAATGGATTTTACACACTT 861539 24 100.0 39 ........................ ACGAAAGAGAATTTGCTAATTCGTTAATATCTTGAACGC 861602 24 100.0 38 ........................ AATTGCGTCTGTTCTGTCTCTGCACTCTGCACTATTAA 861664 24 100.0 38 ........................ ATGAGCTGAAGGAATTAGTTAAGGTCGTAGAGAAAGAT 861726 24 100.0 39 ........................ CTTATGCGGTCATTAGAACCATACAGCTCCTGGAGGAGT 861789 24 100.0 43 ........................ TTCTCACATTTATCCTTAGAACCGTCATAATCGTTCAAAATCT 861856 24 100.0 40 ........................ AAATAACCATTGTCATCAAGTTTTACGATGCTTGTTGGTT 861920 24 95.8 0 .......................T | ========== ====== ====== ====== ======================== ============================================= ================== 117 24 100.0 39 GATAATCTACTATAGAATTGAAAG # Left flank : CTTTATTGGGGGCATATGATAGTTCCATCCCCGGAGCTCCTCTTCAATAGGGTCTGAAGCCCTATATGAGTGGAGCCTTCGTAACTGTCTAATTATCTGCGACCTCATAATATAATAGTAGTTGAAAAATCTAAAAACCGTTTTAAGGAGTGGGGTAAAGACATTCCCAAGTTTACTAGGGATTAGCCTAGAATTCTGAGCGTCATCTCTATATAAAGAGTAATAATAAGATTAGGGAAAGAGATTACTCTACTGTTAATGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAATGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCA # Right flank : TACTATAATGTAAGTTGGATTTTGTAAGTAGAGTCTTTATTTACAATAGTTACAATGGAGTAAGAGGACTAGTTTTAGCTTAAGATGTTGAAAATGAGCGACTTAATGGAAGCAACTAGATATATTTCGTATTAGCAAATATCATTTTTCTTTCGCATTTATTAATAAAAGTATATAAAAATCTTGGTGAATTTAGTTGACGTAATACGAGATACTCTTTTCCCTTAACAAGAAAAATTTAATACCTCATTTTTCATATTTAGGGTATGATACTAATCTTAACACTTGGATTTGACGAGAAGTTTCAGTACCGCGCATTAATGAGACAAGGCAAGAGTATTGAAAAGGTCATTGTTGTTGGAGGGTTCAAGGAGGAGAAGGCTAAAAAAGCGTTAGAGTCGCTCACTAATTTTCTAAAAACAGTTAACGTTCCTTATGAGACTATTGAAGTTGACCCTAGAGACTTTGAAAATATTGTTGAGAAAGTTGGCAAGGTTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //