Array 1 3014941-3013464 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044957.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3014940 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3014879 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3014817 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3014756 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3014695 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3014634 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3014573 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3014512 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3014451 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3014390 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3014329 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3014268 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3014207 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3014145 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3014042 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3013981 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3013920 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3013859 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3013798 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3013737 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3013676 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3013615 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3013554 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3013493 29 96.6 0 A............................ | A [3013466] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3032688-3031073 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044957.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3032687 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3032626 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3032565 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3032504 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3032443 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3032382 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3032321 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3032260 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3032199 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3032138 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3032077 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3032016 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3031955 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3031894 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3031833 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3031772 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3031711 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 3031650 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3031588 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3031527 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3031466 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3031405 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3031344 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3031283 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3031222 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3031161 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3031100 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //