Array 1 49485-53972 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNHF01000025.1 Corynebacterium xerosis strain UMB0908 ERR1203674.17957_1_86.25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 49485 28 100.0 33 ............................ GTCTGCCGGGCCGTCACCATAAAGTGCACAGTC 49546 28 100.0 33 ............................ CCAACGGGACGAAAACTCCCGAATCATCCCCAC 49607 28 100.0 33 ............................ CCGTTCGAGGTCTGAGCCGCGCCGGGCGCCGAC 49668 28 100.0 33 ............................ CACGCCGTACTGATCCACCAGCGACTCGGCCCC 49729 28 100.0 33 ............................ CCCCGGCGAATGGGGCATCTACCCCATCGAGGA 49790 28 100.0 33 ............................ GCCGGACTTGTCGACGATGTCGACGATGAGCTG 49851 28 100.0 33 ............................ CCACCACAACTTTCTTCGGTAGTGGTGTCGGTC 49912 28 100.0 34 ............................ CAGGGCGAGCTGGGCGGTCATCACAGGACCTCCA 49974 28 100.0 33 ............................ CTCGATGTTTCCGGACTACTACGGGCTCGGGAC 50035 28 100.0 33 ............................ CCCGAACGCCGAACCGAATCATGTCCTGCGCGG 50096 28 100.0 33 ............................ CGGCCGCCAGTACCGCATCCAGGCCGTGCTGTC 50157 28 100.0 33 ............................ TGGACGGTGATCACCATCGCCGCATGCGCCGTC 50218 28 100.0 33 ............................ TCTATGAGGAGTGACGCGAAGGCGCAACGATCA 50279 28 96.4 33 .................A.......... CGTCGCACCGAGGGCGGAGCCCTCCGACGGCAG 50340 28 100.0 33 ............................ CCCGCCGCGACGGCCGCCACGACGAGCCCCAGC 50401 28 100.0 33 ............................ CATCCTGCCGAAGGTCAACGTGTGGGAGCCCGG 50462 28 100.0 33 ............................ CGTCCCGACCCTGCGGACTGTTTTTGGTGACTC 50523 28 100.0 33 ............................ CGACCGGCTGCATACCGGCGAGCATGACGGACG 50584 28 100.0 33 ............................ CATCCGGGCGCTGGTCGAGCAGGCCGCGCAGGA 50645 28 100.0 33 ............................ CCGGATGACGAGTGGTTGGAACTTGTCCGAGAT 50706 28 100.0 33 ............................ GTGTGGGCTGGTGCACGCGGCGGGGATCATGCT 50767 28 100.0 33 ............................ CGCACGCGATAACCTAATCATTCGTTTCGTTAC 50828 28 100.0 34 ............................ CCAGCGGTCCATCGTCACCACCAGGTGGCAATCA 50890 28 100.0 33 ............................ CAATCTCATCGAGTCCGCCCAACCTTTCGAGTT 50951 28 100.0 33 ............................ CCCGGGCATGAGGAAGAAGCTGCCGAGGAGGTT 51012 28 100.0 33 ............................ CGTCAATACGCCGAGAGTGTCGCTGATGATCTT 51073 28 100.0 33 ............................ CCACGGCGCCGCGTCGCCCTCCGGCGTCGAGTA 51134 28 100.0 33 ............................ CCCCGCGTCCGCCAGGATCGGGGACGCGAGCTC 51195 28 100.0 33 ............................ ATGGTCGGGGGCACGGGCTTCGGCTCCTCTTTC 51256 28 100.0 33 ............................ CGCCCGGCAGTTATCAAACAGCCCTTGCAACGA 51317 28 100.0 33 ............................ CCAGGCACCCCAGGGCAGCGGATTCGGCGGGTT 51378 28 100.0 33 ............................ CGGCCAGATCGTCTCCGCCATCTACGCCGACAC 51439 28 100.0 33 ............................ GAACGAGGTATTCGAGCAGTGGGCATGCAACTA 51500 28 100.0 33 ............................ CGTTACCATGTGTAAATGGTTGATCGATGAGGA 51561 28 100.0 33 ............................ GTAGCCGATGGCGAAACCAGGGTCAGTGAGCAG 51622 28 100.0 33 ............................ CCATCCGATCGACGGATCGGACGCGACCTTCGC 51683 28 100.0 33 ............................ CATCGGGCTGACCGCAGACCAGACCGCCGCCCA 51744 28 100.0 33 ............................ TCCCGCCCGGCGGGCGGTGTCCTCGTCCATGTC 51805 28 100.0 33 ............................ CCAGCACCACCCCGCTACCGCCGACTCGTCGGC 51866 28 100.0 33 ............................ CCGACAGCACTACCGCCGATCTTACCGCCGCCA 51927 28 100.0 33 ............................ CACCCACACTCGGCCCTCGCCATCCATGACCAC 51988 28 100.0 33 ............................ CGCCCGGCGCGGTGTACCAGACCTCGCCGGTCC 52049 28 100.0 33 ............................ GTGTGCCCGAATTATCGTGGCAGTAAAACTTCC 52110 28 100.0 33 ............................ CCCACCGACACGTTGACCATCACCCCCGGCCAC 52171 28 100.0 33 ............................ CTAGCCTTAGAACGGAAAACGAAAGGAAAGAGA 52232 28 100.0 33 ............................ CGACCGCCCACACGCGCGACGGGTACTCGATCA 52293 28 100.0 33 ............................ GGCGGCGCGGGCGGCGTAGGTTGGCCGCGGCGT 52354 28 100.0 33 ............................ TATCCTGGATCACCACCCGGTCGCCGTCGAGCC 52415 28 100.0 33 ............................ CTGGCCTTAGAACGGAAAACGAAAGGAAAGAGA 52476 28 100.0 33 ............................ CATGCGCGAGGAATGGGGCTTCATCGCCGTTTA 52537 28 100.0 33 ............................ ATGTTCCCCGGCGGGGTTAGTTTCGCCACCAAA 52598 28 100.0 33 ............................ CGGGGCGGACGGCAGCCTTCAGGGTGGGAAAGT 52659 28 100.0 33 ............................ GCATTCCACTGTTTCCGATATGGGGCCGATCCA 52720 28 100.0 33 ............................ CCTTGCAGGCGCTAACTTGTCCGGTGCTGACCT 52781 28 100.0 33 ............................ TCCACGCATGATTCGTATACCGCGACCAATCCC 52842 28 100.0 34 ............................ CCTCACCGCTGGCGAGCGTGCCGAGGTGTTGCGC 52904 28 100.0 33 ............................ TGAGAAGGTCGCGCTCGACGGTCCCCCGGACCT 52965 28 100.0 33 ............................ CATGGAAGGAATCATGAGCACTAAGGAAACCCT 53026 28 100.0 33 ............................ CTCACGCGATGGTGAAGGAGCTTCTTCGCCAAG 53087 28 100.0 33 ............................ CTTGATCGGCGCTAACCTGTCCGGCGCGAACTT 53148 28 100.0 33 ............................ CATCAACCGCGCCACCAAGATCATCAGCGACAC 53209 28 100.0 34 ............................ CCAATTCCAGGGCGAAGTGATGTTCTACATCCGC 53271 28 100.0 34 ............................ CACCTCACTTGGCCCCCACCGAATAAAGTGGCTT 53333 28 100.0 33 ............................ CAGCGACTGTAGCGACGGGCCGACAACTTCCAT 53394 28 100.0 33 ............................ GTACCACCAGCAGTGGATGGGCGAGGCGCAGCG 53455 28 100.0 33 ............................ CGCCCGGCAGTCGTAGAACATGGAGCCCATGTT 53516 28 100.0 33 ............................ GTACATCGTCCGCCACCACCTCGCAGGTGTCGG 53577 28 100.0 33 ............................ CATTTGCGACAGATTCCGTGACCTTCGACTTGA 53638 28 100.0 34 ............................ CCCACACCGACGACACCAGAAGCTGTTGCCCATT 53700 28 100.0 34 ............................ TGGATGAAAGATCTCCGCGCCGTTCTGGAGGATG 53762 28 100.0 33 ............................ CGGGCCGCGGACGGGGCCGCCGCCGAAGGTGCC 53823 28 100.0 33 ............................ CCTTTGGCAGCGCAACATGTTTGCTGTTCTCGC 53884 28 100.0 33 ............................ CGTGCACCCACCTTTCCCCTATTCGCCTTCGCC 53945 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 74 28 100.0 33 GTGCTCCCCGCGTCAGCGGGGATGAGCC # Left flank : TGGACGTCGAACTCATGCTGTGGAACGAGCTCGAAGTCATCGCGGCGGGCATCAATTGGGCGGAACCCGAGGAAGTCGAATCGTCGTGATAGTTCTGGTTGTGACCGCATGCCCGGCAGGCCTTCGAGGTGATCTGACTAAGTGGCTGGCCGAGATTTCACCGGGTGTTTTCGTCGGGCAGCCTTCGGCACGCATCCGGGATCTTCTGTGGGATCGGACGGTCGATCTCTGCAAGGACGGGCGAGCGCTGCTGGTGTTCAACACCAACAACGAGCAAGGGCTTGAGTTCCGTACGCACAGGCACACGTGGAAGCCCACCGACTTCGATGGAATCACGTTGATGATGCGGCCTGCGACGAAGTCCTCCACCCGACGTACCGGATGGAGCACCGCGCGAACCGTTCGACGGAACAGGTCCTGAGTCTCTACCGCGCAGGTCGTTTTCGGTAGAGTCGTACCCGCACGAGCGTTCTGGCTTTCATTTCCTCAGCTCACCAAGT # Right flank : CGTTACCTTGATCGTGTCCCCGTAAGCTCGGGGGCAGGTCACTGGCCTCGGTATGGCTGATTCGCCCTGTTGTTCTACATGATCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTCAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTCAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 91-302 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNHF01000020.1 Corynebacterium xerosis strain UMB0908 ERR1203674.17957_1_86.20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91 28 82.1 33 CCC.C.......C............... CAGCATTCGGCGGACTTCGCGCAGCAGTTCGTA 152 28 96.4 33 ..A......................... GCCCGGCCACTGCCCGGCCATCATCGTGTCGGT 213 28 100.0 33 ............................ GCCGTCGATGCCGAGCTTGTCGCCAATCGCGGC 274 28 82.1 0 .C......................CTTT | C [296] ========== ====== ====== ====== ============================ ================================= ================== 4 28 90.2 33 GTGCTCCCCGCGTCAGCGGGGATGAGCC # Left flank : GCCACCATGTTCGAAGACAGGGCACCGGAGGTTAGGACACCAGGTCGAGAAAACCACCGCGCAGGGGTTGACAATCTAGATAGGGACACCC # Right flank : TACGACGGGCCGGCATGGATCGATCCACGCCGGCCCGTTTCGTTCTGCTCGGATCGTGCCATCGCTCGTTGGCCACCCCAGCAATCGATCCCTCGAAACCCCCGTGCACCCGGAATGGTTTCGAGTGATGTACATCGCTCGCGCAGAGCGCCGCACCGCTCTCGTCGTCCCCACCGTCGCCATGACACTGCTTCTCACCTCCTGCGGCGGGGATGCGGGATCGGGAGACACGGAGGATACGACCGCCAACGGCAACGACATCGTCGCCTCCGCACCCGCGGACGCCACCGAGTCGGCCGCAACCTCGGAGAGCACAGACACCTCAGAATCCCCCGAAGACTCGAACGGCCCGCCCGCCGAGCAGGACGCCGACGGCATCGAGCTGACCATCACCAGCGCCGGCCCCTCCGAAACCATGTCGGACGCCAGCGCGGTGAGCTTCGAATGGACCATTGAGCCGGGGCCGACCGGCGCCTGCGATTTCATGGTCACGGTGTACG # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTCAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTCAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //