Array 1 113197-114689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESG010000006.1 Salmonella sp. 3203110320160211 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 113197 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 113258 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 113319 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 113380 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 113441 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 113502 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 113563 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 113624 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 113685 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 113746 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 113807 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 113868 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 113929 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 113990 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 114051 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 114112 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 114174 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 114235 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 114296 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 114357 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 114418 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 114479 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 114540 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 114601 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 114662 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 130821-132785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESG010000006.1 Salmonella sp. 3203110320160211 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 130821 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 130882 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 130943 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 131004 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 131065 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 131126 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 131187 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 131249 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 131310 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 131371 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 131432 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 131493 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 131554 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 131615 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 131676 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 131737 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 131798 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 131859 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 131920 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 131981 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 132042 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 132104 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 132165 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [132207] 132207 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 132268 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 132329 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 132390 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 132451 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 132512 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 132573 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 132634 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 132695 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 132756 29 96.6 0 A............................ | A [132782] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //