Array 1 10671-15090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHI010000029.1 Clostridium perfringens strain 1805-F3 NODE_29_length_17645_cov_86.1839, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 10671 29 100.0 37 ............................. ATATTGCTGCTTAAATCTTTATTAACATAACCTTTAG 10737 29 100.0 36 ............................. TTAATCTTACCTACTGTTAAATTATCAGCATTAAGA 10802 29 100.0 37 ............................. ATACAGAAATCAATGTTGTTAATACTAAAGTTCATAA 10868 29 100.0 36 ............................. CGAGGTTATTAAAAGTTAGTAATAATGCTAATCTAA 10933 29 100.0 35 ............................. AAGTATAAGTCTATTTTAGATTATTCTTTAGGAGA 10997 29 100.0 38 ............................. GTGTAATGATGAAGAAATTAAATCTCTTTATAGTATGA 11064 29 100.0 37 ............................. AAAAATAAATAAAGTGAGGTGATTTTATGGGGAAAAA 11130 29 100.0 36 ............................. ACTAATAATTCTGATAATGGAGAAGTAAAAACAGAA 11195 29 100.0 37 ............................. ATAGAAGAATTAAATAGTAAACTTAAAAATTTAGAAG 11261 29 100.0 37 ............................. ACATCTAGCAATCCAATAATTTGGCATATAGCTTATG 11327 29 100.0 37 ............................. CCTAGCAACTAAGCAAAATATAAAAATTGGAGAAAAA 11393 29 100.0 37 ............................. GTATTCGCTGATTTTGAATATACTGACGGTCAATATA 11459 29 100.0 37 ............................. CAAGATTTGACTTTTGATGATGAATTGAATTATATGC 11525 29 100.0 37 ............................. CAAGGTGTTCAATATGTTAAGGAAAAGGGTCATGAAG 11591 29 100.0 36 ............................. TAATCTAAATACTTTCTAGCCAAACTTTGAGCAATA 11656 29 100.0 37 ............................. AAGTAAAAGTAGTGCTAGTGCTTTCTTAAAGGATTTA 11722 29 100.0 36 ............................. TTAGCACCCCCTCCCCAAAGCATGAAAAGGCACTGC 11787 29 100.0 37 ............................. TTAATCTAGCATATAAACTAGCTGGCTTATATTGATT 11853 29 100.0 37 ............................. TGTCGGCTTTATTGGGGGTGTATTATGTTACAAAAAA 11919 29 100.0 37 ............................. GGGTATGGCAAAACTATGGCTATGTCAGAGGAACTTT 11985 29 100.0 37 ............................. CCGATTGATTTGCCTGTTGGTGGTTCTGTTCCTACTG 12051 29 100.0 36 ............................. GGATTAATTGTAGCTACTATATTAGAACTTGTATTA 12116 29 100.0 36 ............................. TTATATGCCTCACAGTGGAGAATGTTCCATATTTCA 12181 29 100.0 37 ............................. TTACATCAACATCACCTATTATGGACAGAAGTACATT 12247 29 100.0 35 ............................. ATTTACGTATTCATCATGACTTTTTATCTCTTCAG 12311 29 100.0 36 ............................. AATTCAGCCAAAACCTCATGAACATAACCTTGTTCA 12376 29 100.0 36 ............................. TCAAAATCAGAAGTAAATTTTATTTTTATTTCATGA 12441 29 100.0 37 ............................. GAGGAACAAAAGGCTATTGATGAAAAGCAATCAAGAA 12507 29 100.0 36 ............................. TTTGAATAAAAGTTACTATGAACAACACCATCTGTA 12572 29 100.0 36 ............................. CAATCAACTCTAAGTTCAAATATAAATTTTAAAAAT 12637 29 100.0 38 ............................. CATAGTTATTCACCTATCCTTGATAGGATATCTTTCCA 12704 29 100.0 37 ............................. ATAGGGTCAATGATTTCTTTCTTGGAGCTTTGGCTTG 12770 29 100.0 37 ............................. AACCACATCTTTATTATAGCACACGTGTGCCATAATT 12836 29 100.0 36 ............................. CAATGAAGAGGGAGCTTGATAACTATGTTAAAGTTC 12901 29 100.0 37 ............................. TCTGAAATGGTTAGATTCTTGATAAGAGATAGATATA 12967 29 100.0 36 ............................. GAGATTCGGTGGAAGATTTGACAATAGTCAGTCTTA 13032 29 100.0 36 ............................. ATCTTTTCATATTTACAATATGTAGTTAACTCATTT 13097 29 100.0 38 ............................. TGCACCAACACAAAACCAATTTTTGTCATCTATAGGAA 13164 29 100.0 37 ............................. TTCTTTGACTTAATAGACTTAGAGTTTTTACTACAAG 13230 29 100.0 37 ............................. AATATTAACCATTGCCAGTTAATCGAGAATTCTTTAC 13296 29 100.0 37 ............................. TAATTTCAAGAAAAGTTAACGACTTTGTCGTAAAATC 13362 29 100.0 36 ............................. CGATTAAGTTAGCATAGTTTTCAAACACTTGTCCTG 13427 29 100.0 36 ............................. TTAGCTTTTAATTCTTCTTGTTTTTTCACTGCATTT 13492 29 100.0 36 ............................. GTTATTATCATCATTATCCCCGAAAGCTTAGTTTTC 13557 29 100.0 37 ............................. CGATTTAAAAAACCTAGTCGTGGTCGTTTGGTTTTTG 13623 29 100.0 36 ............................. ACTTTATAGGTGGGTTAATACATGGTGATGAACATA 13688 29 100.0 36 ............................. TTTGTTATTAAAACTCTTCAATATTGCAATCAGTAA 13753 29 100.0 36 ............................. GAATTAATGTTAATGGATTCATCAGTTAGTGCAATA 13818 29 100.0 35 ............................. TTTTCTAAACTAACTAATTTATTAGACGTTTCACA 13882 29 100.0 37 ............................. CACTTTATATATAATTTTTTTATTTATTTCTTAGCTG 13948 29 100.0 37 ............................. TCATGGATTCCTGGCATAGGTGGAAGTCATTTTGGTG 14014 29 100.0 36 ............................. TCTACTATAGTAAGATTATTAAATATTTCATTGCCT 14079 29 100.0 36 ............................. ATATTTATTGCAGCTTTAGGAGAGTTTGTTAATCCT 14144 29 100.0 35 ............................. TGCGAAATCTAAAGCAGCTCTATTTGATAGAATGC 14208 29 100.0 37 ............................. GTAGGTATATATTGGTTTAGCTATGCTTGGAATGAAG 14274 29 100.0 35 ............................. ATCAATTTCTTTTTGTCTTTTCCAAATAAGTCTTA 14338 29 100.0 37 ............................. AAGAATTAGAAGATAAAATATCTAATTTAGAAGGAGA 14404 29 100.0 37 ............................. ATATATAAATGTAAATGCGAATGTGGTAATATAGTCA 14470 29 100.0 36 ............................. TAAAACTACTTGTACCACTTATAGCATTTTCAAAAC 14535 29 100.0 37 ............................. CTCAAGATAACTATTTTCATCATTTCATAAGGAGTTC 14601 29 100.0 37 ............................. TTACGATGTGTAGAAACATTGTGAAGGTGAAAGAATT 14667 29 100.0 36 ............................. ATTAGATAAAAAAGATATTTTAATTAAAGAGCCATT 14732 29 100.0 37 ............................. GCAGGGGCATTAGGATATAAGCTACAAGATGTCGCAG 14798 29 100.0 36 ............................. ACTGGAGTAACTGTAATTCTTTAGATAGTAATTATA 14863 29 100.0 37 ............................. AAGAAGAACAAAAGAGAATTAAACAGGCTCAAGATAA 14929 29 100.0 37 ............................. TATCTCGAACATAATTCACCTAATGGCAAACCCACTT 14995 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 15061 29 86.2 0 .................GAA....C.... | C [15088] ========== ====== ====== ====== ============================= ====================================== ================== 68 29 99.8 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATACATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 166-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHI010000025.1 Clostridium perfringens strain 1805-F3 NODE_25_length_29106_cov_246.257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 165 27 100.0 39 ........................... AATCAGGTGTTAGATTTTAGAACCATTTTTAAAAAATAT 99 27 100.0 39 ........................... AATGGGATAGATGTAAATCCCTTAGCTCTTTTTACCACA 33 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ======================================= ================== 3 27 100.0 40 GTTTAACTTTAACATATGATGTTTTTA # Left flank : ACTTCTTCTCCATTATAGATTACAGCTAATCTATCCCTTATTTCTTCCACAAAAATCAAGTTGGATTCTTCCTTATTTTCTTCTAATGTCTCAACATCTTCTATTTCTTCTACTTCTACTTCTTCTGGTCCTTCTGTTACGGTAATGTTATAATTATTTTTTTTACCAGAACAAGCAACTAAAGAAGATGTTAAGATTACTATTAAAATCATACTTAAAATTGTTTTTTTCTTCATATTTTTTTCATCTAGCCTTAGCTAGATACCTCCTTTTTCCCTATATATTTTACAGGAGAATTATACCATATATTATAAATTTTGTGATTTTATTTACCAAATATATTTAAAAAATAAATCTCTAAACTGGCTTACCATCTATATTTTAAAGATTTGTTAATTATTAGAAAACAAGTAATGATGTATCTGGCAAAAAAACATAAATTTTAGTAATATAAATACACAGAGAATTTTGTATTTTAAAGAAATGGCTTAATTTTTAAG # Right flank : ATGAATT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACTTTAACATATGATGTTTTTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //