Array 1 92432-94360 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDSD01000017.1 Proteiniphilum sp. X52 NODE_17_length_94393_cov_69.047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 92432 30 100.0 34 .............................. GCTCTTTCAGCGCCTCCTCCTCGCCCCGCAATTC 92496 30 100.0 36 .............................. CGAATAGAATGTGCATTCATTTTTCACCCCTAGACT 92562 30 100.0 36 .............................. AAATTCCAACTCGTTTTTCTCAACTCGTTTTCGCGT 92628 30 100.0 36 .............................. GTGCGAATATGTCATAATCCGCCGGGTAATTTGCGG 92694 30 100.0 36 .............................. ATACAGCGCACGAAATAGGCGTGGGCGTGAAGTTTT 92760 30 100.0 36 .............................. TGAAATTCGACGCCAACAACAATCCGCTGCCCGCAA 92826 30 100.0 37 .............................. CCGCAATTGACAAGGTGTTGATGTTTGGAGACGACTT 92893 30 100.0 34 .............................. CACCCAACGGGCTGCTCTGGCACGACATAGTGAA 92957 30 100.0 36 .............................. GAAATACTACTTAGTGAACAAGTGGAATATAGTTGT 93023 30 100.0 39 .............................. CGGGAGCCTGGACGGGATCAATCCCGACCGTGGCCGCAA 93092 30 100.0 34 .............................. ATATCAGGCAACAATCATGCGAAAAATATTCCTG 93156 30 100.0 36 .............................. CACATCGAAATATCTGACAAAGTTCACAGAGCATTT 93222 30 100.0 34 .............................. CGGCGGAAGCCATGAAATACGACGGCAACAACAA 93286 30 100.0 35 .............................. CGGATATCTTGCCCTCGTAGTCCGCCTGAACGTCC 93351 30 100.0 34 .............................. ATCCTATCTCATTGAAATAGAATTTATCTGGATT 93415 30 100.0 34 .............................. CAAGATTGAGCGTTGTTCAATCAGTCGGCACGAA 93479 30 100.0 38 .............................. CAGGTACTGGTTTGCGCCCACGGTCGGGATTGATCCCG 93547 30 100.0 38 .............................. GATCGTATACCTTCATATTTCGGATGTGCTTCCGCACG 93615 30 100.0 35 .............................. ATATCTTCGTTTCAGCAAAAGATGTAATTCAAGTT 93680 30 100.0 34 .............................. GTTGTTTTATTCGGTCGCACAATCGCACGCGCTT 93744 30 100.0 35 .............................. ACGATCAAGGGGTTGGACACCTCTATAAAGAAGTA 93809 30 100.0 36 .............................. TTGTGAGTATATCCCACACGTGCACTTCTCTCGTCT 93875 30 100.0 37 .............................. TGAGCTCCACTATTGGGTTACGGTACAAATCCACACA 93942 30 100.0 34 .............................. TTGTACACCGCCCTTAACACGACTGTGGCGTTGT 94006 30 100.0 35 .............................. TTGCATGAGAATTTTGTCCTCAAATGTATTGTTTT 94071 30 100.0 34 .............................. GCGGATGGGAAATTGTAATATCGGTGATGTAGTC 94135 30 100.0 36 .............................. CTTCGTTTAACCGTGACCTTGCAGATGAATTAGGCG 94201 30 100.0 34 .............................. GTCGGCAAAGAAACATTTGAAACGGTCTATTGGA 94265 30 100.0 36 .............................. ATCTGCGTCAGAGATCGAGATATAAGACAGGGGCGA 94331 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 30 30 100.0 36 CTAATAATTGCACCACACTGGAATTGAAAT # Left flank : TAAACCGTTTAAAATGTATTGGTGATGTATGTAATTTTGGTTTACGACTGTGGCGAAAAACGAGTCGGCAAAATGTTGAAACTTTGTCGCAGATATTTAAATTGGATACAAAATTCAGTTTTCGAGGGTGAAATTTCCGAAGTTAAACTAAAAGAATTAACTTTGAAAGCTGGGAAAATAATGAATCTGGAAGAAGACAGTTTGATTGTTTTTTCGGGACGGACCGAAAAATGGCTGGATAAGCAAATAGTTGGAAAAGAACGTAGTAGTATTGATAATTTTCTTTAAACGATTGTCGGTAACATCGCTTTTTCTGGGTAAAACGATAACTGTTGGAATAAGAAGTTCTTTGACATGTTGAAAATCAATAAATAAAACAAGTTGTCGATAGTCCGGATTTTTTATATCAATGGACATCGACAACTTTTCTTGTCATTTTTTTGTATTTTGTTATGGTTGAATGCCTGATATTCAGCCATATTTTTCACCGTTTATAGCGG # Right flank : CATGAGAGGCGAGACCTAGTTAAATACGCGGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAATAATTGCACCACACTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 9664-10348 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDSD01000030.1 Proteiniphilum sp. X52 NODE_30_length_42193_cov_74.7944, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9664 30 100.0 36 .............................. CAGCAAAAGGCGCTTCATCCGTAGCCGACACACCAT 9730 30 100.0 34 .............................. ATGTAAACGGACTACCAGTGTCCGGGATGCGGTT 9794 30 100.0 37 .............................. ACCGTCCACCAGCCGTTCCCGGATATGACCAGGTTGA 9861 30 100.0 36 .............................. GCATTACTATGTCCTCTAAAAACGAACCTGACGGAA 9927 30 100.0 34 .............................. TCGGGTATTCCCCCGTTTCAGGGTTCACGGGGGC 9991 30 100.0 36 .............................. TTGTTTGTTTTCACCGATGATGGTATTTGGGCATTA 10057 30 100.0 35 .............................. TTTCCCTTGATTTTTGTGGCGACAATACTGTTGTC 10122 30 100.0 35 .............................. AAGTGCAAAAAGCACTCAATTTCAACTTGCGCAAA 10187 30 100.0 35 .............................. ACTCGTCTTCGGTTAATTCAGATAACTGCTTTTCA 10252 30 100.0 37 .............................. GTTGAACGCCCGCACTGGTGCCACTGTGCCGGGCATG 10319 30 70.0 0 ................A...T..GCATTCG | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 97.3 36 CTAATAATTGCACCATTCTGGAATTGAAAT # Left flank : TCCTCACCATCAACGGGCTTCCCATTACCGATTGGTGCGAGCAGAAATGGAAACAGCTAATCAATCGCAACCGCTCGCATCGGTTGTAAATGAATACGCATACTTTTTCCTTTCATAGTTGTATTTCAGTCCCGATAAAACTTTTTAAGAAGAAAATCACGCAAAAACGCTCACTTTCCCTCGCAAATATGTACCTTTGCAAGCAGTAAAAGTGAGCGTTCTTTGGCTATTCAAACCAATGTGCCTCAATGCACTCCGCTCATTTCTAAATCGTTACCTGTGCATCTACTCCAAAATGTTAACACTCTATTATCCAACGAGATAGTTCAGAAGCGAAAAATCTATTAGGAAAAGACCCCATCAGTCATTGGGATATAAAACCCCGGAAGAGATGTTCCGGGTGGCCGCTTAGTTTCCTGGTACCGCCCCGCGGGGCGGTACCAGGAAACTAACTTATCTGATAGTAATAACTGTCTAAGAAAGGGGAGAAGCTTACACCG # Right flank : GGTGTACCCCGTATTGTTTGTACCTTTTATAGTTTATGAAAGTGGACTTTCATAAACTTGCAAAACATTCGGAGTCGATTTGGAGTTTTTAGGAGTTTGCTTGTATCCTGTTGCGAGGTAGCAGTTCGGCCAGATCCTTCGAGTAGTCGTTATCGTAATCGTGGATATGGGTAAGGACATGCACCCTCCGTAAGCATTCGATAAACTACAGGTATTAAACCTTTATATATAACAATAGCGACTGTCACTATGAACCTAATAGTTGCAGTCGCTATTGTTTTGTTGTACCTATATCTTGCAGCTTGGGTTAGTTACCGGATTCTGCAGTTTGTCTGGTCAGCAGACTTTCCGGATGTTGCAACTTCCATTTGTGCGGAAGCAGATTCAGGAGTTCCTCATGCGTGGCCTTTTTATGATAAGGCATTCGGGCAATGATGTCATTCAGGTAATCCCTCGGATTCACATCGTGTGCCTTGCAGGTAGCCAGCAGGGAACAGATT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAATAATTGCACCATTCTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 3873-114 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDSD01000045.1 Proteiniphilum sp. X52 NODE_45_length_3904_cov_5.84034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3872 29 86.2 35 ..T........C....T...T........ TCGTCGTTTACGCTGCTGAATATTTCGTATAACGG 3808 29 100.0 37 ............................. TAGGGTGATCGCCGACTGCGCCGTGCCCCCAACGTAG 3742 29 100.0 35 ............................. TTCTGCTTGTTACCCTCAGTAAGTTGTATGTCATA 3678 29 100.0 39 ............................. TTGTTTTGGATATATGTACTTTTCAAGAATATTCTTCTT 3610 29 100.0 39 ............................. TCTATCATGTCATATTCGGGGTTGAAATGATTTTGTGCG 3542 29 100.0 35 ............................. TAAAGATAGCTGCAATGTGTTGGTTAAAACAGTTA 3478 29 100.0 37 ............................. TCAGGTGATTGATTTGCCGAATGATATCGGGTTGATT 3412 29 100.0 36 ............................. TGTACGAAAGTCCGATATTTGGTAATGCATCAGAAT 3347 29 100.0 36 ............................. TACGTGGTGGCTCACGTAAAAAAGCCGGGTCAAGGC 3282 29 100.0 36 ............................. TGATAGAAGAATCCGGGGAAACTTGCTTTACAAACA 3217 29 100.0 36 ............................. TCAATTATCACATATATAACCACCAACCCAGCAATC 3152 29 100.0 36 ............................. TAATGGCGTACAGGAGTCTCACATTCAAGTGTAGGT 3087 29 100.0 38 ............................. ACTGTTTATGGTGAACGAAAAAACACCTATCTTAACCG 3020 29 96.6 36 ...................T......... CAGTAAAACTGTTTTTTCGGGAAATTCCGGAGAAAT 2955 29 100.0 36 ............................. CGAAGTGGATTTTCTTTCTCTATTATATTGTCAAAA 2890 29 100.0 36 ............................. CTGAAGTCCGGCAGATTAACGGCAGCCGCCAAAGTG 2825 29 100.0 36 ............................. CTCGAGGATGTGGAGAAACAGCTCAAAGAGGCAAGA 2760 29 100.0 38 ............................. CTAATAATAGTTATCGTCAATTACTCCCTCCCAATATT 2693 29 100.0 36 ............................. CGCAAGAAATTGCTAATAAAATCTTATGTAAGATGA 2628 29 100.0 35 ............................. CCTCTTATATAGAGAGGTATAATGGCACGAATGAG 2564 29 100.0 38 ............................. CAGATTGTCGATTGCTCGCAACACGTCTGCATGTCTTT 2497 29 100.0 38 ............................. CGGATGAAATTAACGAATTGGAACGGCTTTTAGAGGCG 2430 29 100.0 35 ............................. CACTTTAAACCATCCGTGTGGAGGCGGGCGAAAAA 2366 29 100.0 37 ............................. CAGATAACCAATGGGGTTCAGGAATTATACATCAATC 2300 29 100.0 38 ............................. CTATAGAAGGCCTGTTTGAAATAAGAGAGGTATGTTTT 2233 29 100.0 37 ............................. CATTATTGTACTTTAAAAGCCAATGTGGCAAATTCAA 2167 29 100.0 36 ............................. CTTCCATATCTGAAAAAGGCATAGTTGAGAACGAAG 2102 29 100.0 38 ............................. CTCTTTTACCTCCCAGTAATATTCATCACCGAATAAAC 2035 29 100.0 37 ............................. CTAAGAATAACTATCCCGAAAAACATCCACTGCGATG 1969 29 100.0 35 ............................. CATGTGGTCGACAGCTCAACCGAAGCGATGAACAA 1905 29 100.0 36 ............................. CCGGGCACACCGATTACGTGCCGATGGTCTGGAGGG 1840 29 100.0 37 ............................. CACAGGGACATGGAGCTCCTCGATACCGGCAACAAGT 1774 29 100.0 37 ............................. CCTGGTTGGAGATCGGCGGGAAGATCGTGCCGGGAGG 1708 29 100.0 37 ............................. CATAACAAGCATCACGTCCTCCACCCATGACTCGGCT 1642 29 100.0 36 ............................. CGATGACAGGTTGCGGGACGAAAAAGACCGTCGCCG 1577 29 100.0 36 ............................. CTTGCGCCGTCGATATATTCATCTTCGCCAAAATTC 1512 29 100.0 35 ............................. CTTTTTCAGATCAAGAGAACGGGAACAGATAACTA 1448 29 100.0 36 ............................. CTTCCGTATTAACCGAAAAACCGCCTGCGTGAGTAC 1383 29 100.0 38 ............................. CCCACCTGCCCGAAAGCGGTGGAAAAGACGGGGATCTC 1316 29 100.0 36 ............................. CGCATATCACGCACCCAAATATCGTGTTCCTCCTTG 1251 29 100.0 36 ............................. CCTGCGGATGCCCTTGCAAAAGCGAACACGTCAAAA 1186 29 100.0 37 ............................. CTCGAATGCGACTGCTTTGTACGCTTTTGCGGAAATA 1120 29 100.0 36 ............................. CCATTCACCACACCATGATTTCCTCTTCAGGAGAAA 1055 29 100.0 35 ............................. CGAAAGCGACCCCTAACGAGTTCAATTACGAGGGG 991 29 100.0 37 ............................. CAAGGTGAATCCCGCAAGCTGACCCCCGACGAAGAGA 925 29 100.0 37 ............................. CTTTTCAAAAACAACCTCGGGCAGCAGATAGCCCTGT 859 29 100.0 35 ............................. CGAGGGTCAGGTATCAGGGAGGTCAGGTATTGCAT 795 29 100.0 35 ............................. CTTGCGCCGTCGATATATTCATCTTCACCAAAATT 731 29 100.0 36 ............................. CGTCGCAAATTCCATTTCTGATGTCTGTCTTGGGAA 666 29 96.6 35 ...............T............. CGTCGCAATGAATCCGAAAAGGATTGCGGAAAATG 602 29 96.6 36 ...............T............. CGACCAGATGGCCGTAAAGACTGTGATCAACCGGGC 537 29 96.6 37 ...............T............. CTCGTTCCGATGTTAGCCTTTACTACTTTTGTTGAAA 471 29 96.6 38 ...............T............. CTCATGCTTTCACCCCGCAAGTACACAGATGGAAAAAT 404 29 96.6 36 ...............T............. CGGACACCAAAGACAAGAACTATAAACCCGTTTTGG 339 29 96.6 35 ...............T............. CGCAGTTACTTGAGATCCGTTATTGAAAAGCACCG 275 29 96.6 37 ...............T............. CTCACGCCCTTGCCGTACTTAAGGTCGATGATCCGGA 209 29 96.6 38 ...............T............. CTTCTTTTTTGCATGAGGATATCACCGTCCATTATCAA 142 29 93.1 0 ...............TT............ | ========== ====== ====== ====== ============================= ======================================= ================== 58 29 99.1 36 CTAATAATTGCACCACACTGGAATTGAAA # Left flank : TTTTTAATCTAAAGCCCAACTACCATATACT # Right flank : ATACGGACAGAAGGCTAATTTTTCAGCATCACTCACTATAATTACCCCCAAATCTTAGACAACAAGTATCATTAAAAAAAAGTATTAATTTTGTTGTCATGGTCAAGAGAAAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAATAATTGCACCACACTGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //