Array 1 282149-279982 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOA01000002.1 Salmonella enterica subsp. enterica serovar Uganda strain HIY0218 NODE_2_length_757716_cov_33.434147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 282148 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 282087 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 282026 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 281965 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 281904 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 281843 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 281782 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 281721 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 281659 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 281598 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 281537 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 281476 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 281415 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 281354 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 281293 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 281232 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 281171 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 281110 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 281048 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 280987 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 280926 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 280865 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 280804 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 280743 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 280682 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 280621 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 280560 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 280499 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 280438 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 280377 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 280316 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 280255 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 280194 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 280133 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 280072 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 280011 29 93.1 0 .............C.A............. | A [279984] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 292647-292375 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOA01000002.1 Salmonella enterica subsp. enterica serovar Uganda strain HIY0218 NODE_2_length_757716_cov_33.434147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 292646 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 292585 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 292524 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 292463 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 292402 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //