Array 1 102973-104033 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSNW01000007.1 Deinococcus sp. Arct2-2 NODE_7_length_126043_cov_844.584381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 102973 36 100.0 38 .................................... ATGGCGATCAATGCGACGGTGATGGGGTTATTGAGCAT 103047 36 91.7 38 ...................T.AT............. GCCCATTTCCCGGCTACGCTCTTCTGCACGGCCCGCGT 103121 36 94.4 35 ...A.................T.............. ATTGTGTCGACCACCCGTATCGTAACTTTGAACAT 103192 36 94.4 39 T.C................................. ACGGCAAGCACGCCACTATCAGACTGCCAGCACACACAA 103267 36 86.1 36 .C..........A......T.T.........A.... GGGCGAAGAAGAAATCATTAAACTAGGTGAATTGAA 103339 36 91.7 37 ...A..............T..T.............. TCGAAAGGAATAGGGGTAGCGAACAGCTTGTTCTTAC 103412 36 91.7 37 ............T........T..........G... AAACTACCCTTACCAACGAGGATGTTGGAGTAGCGAA 103485 36 88.9 40 .........A..G........TA............. AGTTCAGGCAAAACTTCTAGGATACCCGCTTGGTCAGCTA 103561 36 88.9 40 .C..T.......G........T.............. AGGTGTTCCGCACGGTTAACATTCACCCGCATGAATTCAG 103637 36 83.3 35 A......T...GG........T.............T GTGATTTTGTACAGCTGCGCCATGGGCTCGACGTC 103708 36 83.3 36 ......CG....G.C.....AT.............. GTGCTCAGTGGGGAGCATTATGCATTTGCTTCCGCT 103780 34 77.8 37 ......CC....--.......T......G...G.G. CGCTGGCCGACGTGACAGAACATGGCCCGGGTTCGGT 103851 36 75.0 36 A...TGCC....G........TA....A........ TTGTCCATCAGGATTCCTTCGAGGTGGTGGTTACAG 103923 36 86.1 38 ......CC...GG........T.............. TCCGTCACACGCGGCCCCAGCACCCCGCCCACGCCCGC 103997 36 83.3 0 ......CT...GG..A.....T.............. | C [104029] ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 87.8 37 GTTGCAAATGAACTTGCCCCGGGAGGGGATTGAAAC # Left flank : GCTCGTCCCCGAAACAGAACAGAGACACGGATCAGGCAGAACTTTTCAAAGAGGACGCTGGTGTCCAGGGCCAGAATCAGGGTATGTTCGCCCCAATCCCGCAGGGCACGGGTCACGAGTGGACCGTAAATGCGAGTGGGGTCGATGGCTGGATTCTCCAGCCACCGACGAAATCGACGTTCGGTGCTCTGGGCGAAGGTGGCGCTGGAGTGGATGTGCGGCAGCCAGGCCGGGAGGGTGCTGCGCTGGGAAGCAGCAGGCCAGTGGTCATCCAGGCGAGAGTCCGCGCGTTGCGGATGTCGTTCCAAAGGCTCGTCTGGAGATGATCGAGGACAGCTTGGTAGAGTCGGGGAGCGTCCCCGGTGGCATTTTCGGTTGTCACGAACAGAAAGTGTCCCCCACCGGGGACGCTTTCTCATACTTTGTGTTAGGCGATCAGGAAGACTCTTACATTTTTAGGGCTGGGAAGGCCGTGGACAACGACCTTTTGAAGCGATAGA # Right flank : CCGAAATCAAAGTCGAACATCATCCAAAAGGGAAGATTGCTCCGCAAGGAGATTCAGTCGCACGTTTCGCATGGGCGGCGGCCTGCGCTGGCGCTGGATGTCATGGAGCCATTTCGCGCGGCGGTGAAGTACGGTTGGGCCGAGAAGGCTGCGGTGTGGTGGCGCAGGCCGTGGCCCACCGAATGCACGAGGTGGGAAGTGGGAAATCCCCTCACGGGGCAACCTCAAGTGCAGCACTTCACCTTCGAAGTGGGCGGGAACGCGTATGACACGTTTCAATCCCCTCACGGGGCAACCTCAAGTGCAACCACTTCATCGTAGGACGTAAGAACCGCCTAATCTTGTTTCAACCCCCTGATGGGGCAACTTCATTTGCAACGAAATCGGCATGCTCGACTTCAGAGCGGGGAAACTCATGTTTTAATCCCCTCACGGGGCAACCTCAATGGCAACTGGGGGATCAGCTACGCCACTTTTACCCTGGGAAGCGGTCTTCAATC # Questionable array : NO Score: 3.29 # Score Detail : 1:0, 2:0, 3:3, 4:0.39, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATGAACTTGCCCCGGGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-40] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 2 105064-104233 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSNW01000007.1 Deinococcus sp. Arct2-2 NODE_7_length_126043_cov_844.584381, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 105063 35 88.6 39 .....G................A.A.........G CCCGTCGAAGTCCCCGCCACCCTGCTCCCATACGCCCTG 104989 35 91.4 37 .......C...A........A.............. CATGAACGCGCGCGCCTGAATGTAGGTGTCCTCTCCG 104917 35 91.4 39 .....GA.....A...................... CACTTATCCAAGCTGGGGGCTGATACGAATGTCATAGAA 104843 35 80.0 37 ......AA...AT..A.T.......A......... TGCGGTATCACGGGGGGCAGACTTGCCCGGTGCGCTT 104771 35 88.6 34 ......AA...A..........A............ CCTGAAATCTTGATCGTTGGCGATGCGGTCTAAG 104702 35 88.6 36 ......AA...A...............A....... CACTGGTACAGGCCGGGAAGTGTATACCATGCCATC 104631 35 88.6 37 ....T.GC....A...................... CCAGAAGGGCTTATCGCCATTCATGCCGTTGTACTGA 104559 35 88.6 39 ......AA...C......................G ACCGCTTCCCAGGGTAAAAGTGGCGTAGCTGATCCCCCA 104485 35 91.4 39 .....CA........................A... CATGAGTTTCCCCGCTCTGAAGTCGAGCATGCCGATTTC 104411 35 82.9 36 ......AA...A........A.C.....G...... CAAGATTAGGCGGTTCTTACGTCCTACGATGAAGTG 104340 35 100.0 38 ................................... CGTGTCATACGCGTTCCCGCCCACTTCGAAGGTGAAGT 104267 35 85.7 0 .C.............................TCCC | ========== ====== ====== ====== =================================== ======================================= ================== 12 35 88.8 37 GTTGCACTTGAGGTTGCCCCGTGAGGGGATTGAAA # Left flank : AGGTCAAGGTTCCAGTCCTTCACTTCCAGAATCAAGGCCCCACGTGTGGGATGCAGCGCCACCACATCAGGCCGCGTCCCGTTCAGAAAAGGCTGGAGGTACACTTCCCACTCTGGCCCCAAGTCGCGCTCTAGGTACGCGGCCAGATGCGCTTCGCCCGCCGTCAGCGGCGTCGCCAACGCCTTCAGTTGTGTCCAGCCAGGAATCAGAGTTGCCATAGTTCAGATATGTCTTGCCCCCTGCCAAAGCGGAAACAAGCCGGATGGCTTACCAAAGCGGAACGAAAGTAAGGATGATGCAGATGAGAGGCCCGGACACTGTGTGGATGGGCAGAAACCTCTATACAATTCGGCTTGCTTCTCATATTCGTTCCGCTATGCGCCCAGTCGGTCAAAAGAAGGGATGTGACTCTCATCCAGGGAAGATGAGTCGATACTCGGAAGACTCTTATCTCAGTGAGGCGGAAAATGCCGCGGAAAACGACGTTGCGAGGCAGTAGA # Right flank : ACTTCCCACCTCGTGCATTCGGTGGGCCACGGCCTGCGCCACCACACCGCAGCCTTCTCGGCCCAACCGTACTTCACCGCCGCGCGAAATGGCTCCATGACATCCAGCGCCAGCGCAGGCCGCCGCCCATGCGAAACGTGCGACTGAATCTCCTTGCGGAGCAATCTTCCCTTTTGGATGATGTTCGACTTTGATTTCGGTTTGCAATCCCCTCACGGGGTAACCTCAAGTGCAACGCGGGCGTGGGCGGGGTGCTGGGGCCGCGTGTGACGGAGTTTCAATCCCCTCACGGGGCAACCTCAGGTGCAACCTGTAACCACCACCTCGAAGGAATCCTGATGGACAAGTTTCAATTCCCTTACGGGGCAACTTCAGGCACAATACCGAACCCGGGCCATGTTCTGTCACGTCGGCCAGCGGCTCCAACCCCCTCACGGGGCATTCAGGTGCAACAGCGGAAGCAAATGCATAATGCTCCCCACTGAGCACGTTTCAATCCC # Questionable array : NO Score: 3.38 # Score Detail : 1:0, 2:0, 3:3, 4:0.44, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTTGAGGTTGCCCCGTGAGGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : NA // Array 3 126025-125053 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSNW01000007.1 Deinococcus sp. Arct2-2 NODE_7_length_126043_cov_844.584381, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================ ================== 126024 36 100.0 35 .................................... TAGAACTCCGCGTGCATGGCCTTGCCGGAGCGGAT 125953 36 100.0 38 .................................... TCATGCTTGATCGTGATTTGCACGCCGTTGTAAGCGAA 125879 36 88.9 35 ...........GG........CC............. TCGTGATAGGTGAGCGTGCGCATTGCGAAGCGTCC 125808 36 83.3 36 ......G...C.G........CC...........C. CAATAGGCGTAACACGTCCCCCAAGAGAGGCCAGCT 125736 35 86.1 36 ......G..T..G..............-...A.... ACCTCCCATACGCCCTGAACGGAAGTAGCAACCTAT 125665 35 75.0 37 ..G...G.....A.A-.G.T..C............T ACCTGCTTGACTTGGCTTTGATTCGACTTCATGCCGT 125593 36 88.9 36 ......G.G...G.........C............. CTGAAGCTGAGGGGGACAATGTCATGGATGCTGATG 125521 36 88.9 37 ......G.....G.........C.........C... GCCCAGACGTAGCGGCTATCTGTGCCTTTGAGCAATA 125448 36 97.2 37 A................................... CGCACCGTCTCAGCGCGTACCTCTACTACAACATTCT 125375 36 97.2 112 ..C................................. GGGATATGGCGGCTCCAAATGTTGCCGCCGTCTGCGGGAGTTATACCTTGTGTTGCCCCGTGAGGGGATCGAAACGTGACGTGCACGAGGCCTTTGAACACTTTGGTGCACA 125227 36 75.0 37 AG.A..CC...TG...T..........A........ TTGCCGATGTACTCCTCGCGCCAGCCGAGCACTATAT 125154 36 83.3 30 ......CCC...G.........A............T ATGGCCTCATGCCGCTCAACTGTCACGCGG 125088 36 77.8 0 ......CC....A...............TG..GGC. | ========== ====== ====== ====== ==================================== ================================================================================================================ ================== 13 36 87.8 42 GTTGCAAATGAACTTGCCCCGTGAGGGGATTGAAAC # Left flank : CTACAAAGTAGTGCACCA # Right flank : TCACCCGATTTGCGTAGGTCTAGTTAAGCGACTTGAGCTTGCCTCTCTGCCTTAACGGGTGTCAAGCAGAGGAGCGTCGAATGAAATCGCTTGCAGGTGTGATTGACCTGTCCATCAATCAACTCGCGTTCACCTTGTGTGCGAGACTCCTCAGTAGGTGACAACTTCAGATTAGCTACGTCCCAGACGGCGAAAAATGCCAGTCGCCCCCATCAAGCTTGATGGGGGCGACTGGCAGCGTTCTCCTGAAGGTGTGAAATCAACAGCATCCGCTTCCCAGCAGGCGACCGCACTGACCCGGCACTTCAAAGCACACGCGAGCCATCTGCGCATCGATACGCTCCAGCGCTTGATTGACGTCGTGTTGGCCATGATTGCGGCCAAGAGCGTCAACCATCATGACCTGAGTGCTCATCTGCCAGGGGTCAGCACACCAAGCGCAAAGAAGCGACGCGCCGACCGCACGTTCAGGGATGACCAGCTGAATACGGCGTTTTTCA # Questionable array : NO Score: 4.33 # Score Detail : 1:0, 2:0, 3:3, 4:0.39, 5:0, 6:0.25, 7:-0.57, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATGAACTTGCCCCGTGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA //