Array 1 11525-11094 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRBJ01000020.1 Campylobacter jejuni strain CB336 20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11524 36 100.0 30 .................................... TCTTGACCTAGCTTTTCAAGCCAAAGTTTG 11458 36 100.0 30 .................................... ACCGCAGAATAAATATTATGCTTAAGTAGG 11392 36 100.0 30 .................................... TATTCTACCCAAATACGCATTAAACTCATC 11326 36 94.4 30 ..........GC........................ CAAATCCAAAGAGTGTGAAATGGAAAATTA 11260 36 97.2 29 ..........G......................... ATCTTAGCACCATAAATCGCTAGCTATAG 11195 36 94.4 30 ......T...G......................... CTTTCAAAATCAATTTTGCAAACTTTAAAA 11129 36 86.1 0 ......T.....GG.T...................A | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.0 30 ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Left flank : GTAAGAACTGATTTATTTGTAGATAAAGAAAATAAATTCCATGCAGTGTCTATTTATAAAGCAGATTTTTCTACAAAAAAACTTCCAAATAAAACCCCTGCAACTACATCAAATGGAGAAACCAAAGAAGGCATTGAAATGAATGAAAATTATAACTTTTGCATGTCATTGTATAAAAATACTCCAATTAGCGTAAAAATAAAGGGCATGAAAGAGCCTATCATTTGTTATTATCATGGTTTTAATACTTCAGGAAGTAAAATAACTTATAAAAAACACGACAACAATTATCACAACCTTAGTGAAGATGAAATGGTTGTTTTTAGAAAAAATGATAAAGAATCTATAGTGGTAGGAAAAATACTTGAAATTAAAAAATACAGTATAAGTCCTTCAGGTGAATTAAGTTTAATTGAAAACGAAGAGCGTAAATGGTTTTAGATATTTTTGCTCAAAAAATAAGAAAAAACATTGATAAAATAGGCTTTTTAGATAAGTCT # Right flank : TAGCTTTTAAATATTTAAATTCATAAGAAAATATTTCTTAATCTACTTTCATCACAACTTTTCAAAAAATCATAGATTTTCTTTCTATAAGTTGATTTATCCTTTTTCCAAGTATTTAGCGTTGGCAATGGAATCGTTGTAATTTTGGCAATTTTAGAATCGCTTAAACCTGTATTAGAAGAATTAATAGAATTTGAAAATATTTCTTTTAATTCTTCTTGATTAGTGTTTTTTAAAAAAAGATATATTTTTTCCCTCCAATTATCTTTTTTTTGTTTCCAGTCTCTAATAGTGAAATAAGGGATATTAGTAATTTGTGAAATTTGGACATCATTGTTCATCAGGCTTGAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGTTTATCAAAATGATTTAAAGCTTGCACATTGCTAACTCTAAGCAATCTTATTTTCCCATCTTTTTTATAAAACACCTGAAAAACTTCATCGCTTTGTTTGCATTTCACCA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATATAAACAATTAATAATAGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 22667-23034 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRBJ01000019.1 Campylobacter jejuni strain CB336 19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================================== ================== 22667 36 81.1 95 .A............A..........-T...A.TG... ATTCTTTTACTTAAAAAAATATTATATTTTTAAATAATACTTTATTAAATATTTGCATGAAAAAATAAATATAAAATATTATGGAATATGTTTGA AA,T [22695,22701] 22801 37 86.5 29 A........................GT...A..G... GGCATTTTTTTGAATAAAATCAAGCAAAA 22867 37 100.0 29 ..................................... TATTAATTTAATATATATTTTGAGTATGC 22933 37 100.0 28 ..................................... TAGTATTCTTTTCTTGGGCGACCTTTTG 22998 37 94.6 0 ..............A...........T.......... | ========== ====== ====== ====== ===================================== =============================================================================================== ================== 5 37 92.4 46 TGTTTTAGCCTATTGTTAATTGTTTACATGGTAAAAT # Left flank : AATTTGGTGATAAATTCTGGCTAATACGAGATAATTTAGCAGTTTGTGAAAATGGCAGAATTTTTGATTATGATGATTTAGGAAAATTGATAGAAACTCAATATGAGTGCATTTTAGATAATGTTTCCAAAGTAAGTTCTAAAAAAATTCTAGCAAATATAATAGATTTGAAAAATATCATCATTGATAATTATTTTATTAATTTGATAGAACATACTATAGATGGTAATAAATTTGAATTTAGCCATGATATGAATTTAATCAAATATAAAGGCTATGTAGCAAATTTAAACACTTTAGAGATTGCAGGACTACCGCAAGAGATGGAAAAGGTAGGAGATGAACTGATTTTGCCTGATTTTCCAAAAAGGCTAGATGAAAATCTTATAAGAGAGTTTCAAGCCCTGATAAAGTTAGCCTTTAGAAAGGATTGTAATAAAATTAAATTATAGAAAACGCACTTTTTAACGAATAAACGCTCAGGTGAAGTGCTAAACCTT # Right flank : AGACTTATCTCAAAAGCCTATTTTATCAATGTTTTTTTCTTATTTTTTGAGCAAAAACCTACGCATACCCTTTTTTCATTTTTTGTTTCTTTAACCTCTCAAAAAAAATTTGTGCCTCATTAAAACTTGGAAATACATTATTTTTTCTTCCTGTGCAACTTTTAAAACGCACATTTCCGTAAACTCTCTCAACCATATATTCCTCAAAAAGAGTGGCAATAATTTCTATGCTATAATAGCGAATGTTTCCTTTCTCAGTTATTCTGTGCAACAAAACATTATTCAT # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTAGCCTATTGTTAATTGTTTACATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //