Array 1 4737-6895 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBKO01000046.1 Neisseria meningitidis strain P4144 P4144_scaffold28.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 4737 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 4803 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 4869 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 4935 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 5001 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 5067 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 5145 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 5211 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 5277 36 100.0 29 .................................... ATTTATATTATTTTTGATTTTGATTTTTT 5342 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 5408 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 5474 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 5540 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 5606 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 5672 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 5738 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 5804 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 5870 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 5936 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 6002 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 6068 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 6134 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 6200 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 6266 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 6332 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 6398 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 6464 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 6530 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 6596 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 6662 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 6728 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 6794 36 100.0 30 .................................... TTAACTCTATCTTCATAAGCCGCACGACTA 6860 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 33 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //