Array 1 217479-213849 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPP01000003.1 Salmonella enterica subsp. enterica serovar Corvallis strain SL_29_118 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 217478 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 217417 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 217356 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 217295 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 217234 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 217173 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 217112 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 217051 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 216990 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 216929 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 216868 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 216807 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 216746 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 216685 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 216624 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 216563 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 216502 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 216441 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 216380 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 216319 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 216258 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 216197 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 216136 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 216075 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 216014 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 215953 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 215892 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 215831 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 215770 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 215709 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 215648 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 215587 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 215526 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 215465 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 215404 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 215343 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 215282 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 215221 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 215160 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 215099 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 215038 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 214977 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 214916 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 214855 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 214794 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 214733 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 214672 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 214611 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 214550 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 214489 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 214428 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 214367 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 214306 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 214245 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 214184 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 214123 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 214062 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 214001 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 213940 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 213878 29 96.6 0 ............T................ | A [213851] ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235273-234025 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPP01000003.1 Salmonella enterica subsp. enterica serovar Corvallis strain SL_29_118 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235272 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 235211 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 235150 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 235089 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 235028 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 234967 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 234906 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 234845 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 234784 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 234723 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 234662 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 234601 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 234540 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 234479 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 234418 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 234357 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 234296 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 234235 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 234174 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 234113 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 234052 28 86.2 0 .........A..T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //