Array 1 35255-36245 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRPH01000014.1 Providencia rettgeri strain GMR-RA1153 NODE_14_length_118051_cov_15.047024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35255 28 100.0 32 ............................ TAATTTAATTTCCATTGCTGTTTTCCTCATCT 35315 28 100.0 32 ............................ TTTGACACCTTTTTCACCGTCAAAAACAACAA 35375 28 100.0 32 ............................ TACGATAAACATCAGTTAGTGGGTATCCAAAC 35435 28 100.0 32 ............................ ATGAGCACGCTAAGTTGATTCGGCGATAAACA 35495 28 100.0 32 ............................ TGACCACGTCACCGTTTCACCAACTATTGATG 35555 28 100.0 33 ............................ TGTTTCTAAGTACCGAACAAGAGAAAACTTTGT 35616 28 96.4 32 ............G............... AGTGCAAACGTCGATTAATGGCAGCGTAGTAA 35676 28 96.4 32 ............G............... AGACATAGAGCTATCAAGAACCGCCTCAGCTC 35736 28 96.4 32 ............G............... GAAAAGATAAGTTCTTGGGCAGACCTGAGACA 35796 28 96.4 32 ............G............... TTTTCCTTTGTTTTATCTATTCACGTAAAACA 35856 28 100.0 33 ............................ CTGCAAATGTCGAATTGCTAGGCGCGGGGAAAT 35917 28 96.4 33 ............G............... ATCGCCGTGAAATCAGACTCAGCGAATCGAATG 35978 28 96.4 32 ............G............... CGAAGTGGAAAAGAAAAGAGCAACTATTGATT 36038 28 100.0 32 ............................ GGAACTAACGCGGCTACGCCATAAATTATCGT 36098 28 96.4 32 ..........G................. TCATGCTGATGAATGGGATCAGGATGTTCTCT 36158 28 92.9 32 ..........G..T.............. TCTTCATTGCATCCCTGCGAGTTAAATTAATC 36218 28 89.3 0 .............A........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.5 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGCACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 44883-45632 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRPH01000014.1 Providencia rettgeri strain GMR-RA1153 NODE_14_length_118051_cov_15.047024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44883 28 100.0 32 ............................ CAATCCATTTGAGTGCAATCTAAGTGGCTAAT 44943 28 100.0 32 ............................ TGACTTAGTTGACGCAGAGCGGGGGTATCGCA 45003 28 100.0 32 ............................ TCAATAAATGTTGCTGATACAGAATAAACACC 45063 28 100.0 32 ............................ ACAACAAAAGTGGAAAAGTGTCAGGGAGAGAC 45123 28 100.0 32 ............................ CTGAAACATTAGAAAGTCGTGCTCAAGATATT 45183 28 100.0 32 ............................ TTACTCTGATGCTACGTTCGAAAAAGCGTGGA 45243 28 100.0 32 ............................ GGATCGCAATAATTCGACTTCAAGCTCTACTC 45303 28 100.0 32 ............................ AGCCCACTCGTAAATGAGCTGTGTAATTAACT 45363 28 100.0 32 ............................ AGCGAATATCAACGCACCCACCGTGTCGATTT 45423 28 100.0 32 ............................ TTGTGCTTTCTATTGATCATCCCTGATGTTGA 45483 28 100.0 33 ............................ CGATGATTCAACACCAACAAGCGCATGTAACGT 45544 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 45604 28 89.3 0 ...T......A.........T....... | G [45630] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCGGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGGTAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATAATTATTCACAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAACTAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAGCATGCTGATACCTATAGTTAAGGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //