Array 1 1091352-1092723 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR890349.1 Escherichia coli isolate MSB1_9D-sc-2280338 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1091352 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 1091413 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 1091474 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 1091535 29 100.0 32 ............................. GCGTCTCGAGCGCCGGACGATTCAAAACCAGC 1091596 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 1091657 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 1091718 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 1091779 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 1091840 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 1091901 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 1091962 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 1092023 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 1092084 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 1092145 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 1092207 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 1092268 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 1092329 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 1092390 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 1092451 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 1092512 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 1092573 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 1092634 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1092695 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACTGCATGGGCTCAGCTCCATGACGTTGCAACATTATCTGACGTGGCTCTCCTGAAGCGGCTGCGGAATGCCGCCGACTGGTTTGGCATACTTGCCGCACAAACACTTGCTGTACGCGCCGCAGTTACGGGTTGTACAAGCGGAAAGAGATTGCGTCTTGTCGATGGAACAGCAATCAGTGCGCCCGGGGGCGGCAGCGCTGAATGGCGACTACATATGGGATATGATCCTCATACCTGTCAGTTCACTGATTTTGAGCTAACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1121932-1122814 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR890349.1 Escherichia coli isolate MSB1_9D-sc-2280338 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1121932 29 100.0 32 ............................. TTATATGTAATACGCATCTCATTCATTGTGCC 1121993 29 100.0 32 ............................. TGGCTGAGTACTTCGGCAAACGACACGGCGAT 1122054 29 100.0 32 ............................. AATGGCCGGGTGGTGATGGGTTCCCGTTCACT 1122115 29 100.0 32 ............................. TGGCTGAGTACTTCGGCAAACGACACGGCGAT 1122176 29 100.0 32 ............................. CTTTCCATGTACTCATCCTTACGATATCCAAC 1122237 29 100.0 32 ............................. GGCGGGCCACGCTCCATGAGTTAAGGACTGTC 1122298 29 100.0 32 ............................. CGAGCGCAACACGGCCATATTATTACCCCATT 1122359 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 1122420 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 1122481 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 1122542 29 93.1 32 .T..........C................ TGTTTTAGAGATGTGTATTCAAAATCAGATAG 1122603 29 100.0 32 ............................. AAATTGATCCCAGGGTGATTATCGTGGGGATC 1122664 29 93.1 32 .T..........C................ ATTTCTTTAATTATTTAGCTGATGCTTTTAAA 1122725 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 1122786 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.9 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCGCAGCCTGTAGCCATTCCACTTCCTGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGTTGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //