Array 1 290265-288164 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACRXS010000005.1 Klebsiella variicola strain Kpn01734 isolate Kpn01734, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 290264 28 100.0 33 ............................ TATTGTTAGCGGCAAGCGTCATACGACCAGGTA 290203 28 100.0 33 ............................ CATTAATCAATACCTACAAATCAATTACGGCGT 290142 28 100.0 33 ............................ TTGAGATTTGGCTGAATGCCAATGAAACAGAAA 290081 28 100.0 33 ............................ TCTGTATTATCGTTTTGGCTTTTCTGGCGGGGC 290020 28 100.0 33 ............................ CAGCGCCCACCGGTTCTGCGCTACCGCATGTTT 289959 28 100.0 33 ............................ TATATTTTGAGCCTGGCCTTACACTGCTTTTTT 289898 28 100.0 33 ............................ TTCTGGCGGTTGAAACAGCGCCGCCGCGCGCAA 289837 28 100.0 33 ............................ CTGGTGGCCCTTAATGCTGGAGCTGTATCGCCA 289776 28 100.0 33 ............................ CATGCGCCGCACGAAGGGGTAAAAATGCTCAAG 289715 28 100.0 33 ............................ TTGGCCTGGTACGCCTGCCAGGGGCGCCGACAA 289654 28 100.0 33 ............................ TCAGAAGCCAAAAAGTCCGGTGATACCACGGTC 289593 28 100.0 33 ............................ CCCGGATCTCTGTCCGGTGGAGTTGCTCCCGTG 289532 28 100.0 33 ............................ CACCAGGACAAAACGGATCGGCCCCGGCGATAT 289471 28 100.0 33 ............................ CGATGGGCACCGTGATCTACTGGTACCCCGGGG 289410 28 100.0 33 ............................ TGCGCCGGCCGAGGTGCTGGTGCGCGAGGTTCT 289349 28 100.0 33 ............................ CGAAACCGCGGCCCGCCGGGCAGCGGCGGCAAA 289288 28 96.4 33 ......................G..... TTAATGACGCGCATTGGTGGCTTTGAAAAGGTG 289227 28 100.0 33 ............................ CTTCACGTTTTTGGTCATCATGTACATGATGCC 289166 28 100.0 33 ............................ TCACTATTAACACTTACGATGCAGCTGGCCGTT 289105 28 96.4 33 ..............T............. TAACGTCGGCTCGCTGTCGCCGGACGAGTCGCG 289044 28 100.0 33 ............................ CATCAATTGACCTGTCACAAATTCCGCAGCCGG 288983 28 100.0 33 ............................ CTTAGCTTCTTTCCTGAGCTTGGGTTCGGATAC 288922 28 100.0 33 ............................ CTCCGCTCGATATCAGCGACAAGTCAGCTGAGT 288861 28 100.0 33 ............................ CCTGGTTCTGGTGCTGACACACAGCAGCAGTGT 288800 28 100.0 33 ............................ TGGCAGAAGTACCGTTACCAACTCCCACAGATA 288739 28 100.0 33 ............................ TTTATTGATATTGCAGGCTTCCTGCCCGTTTTC 288678 28 100.0 33 ............................ CGGGCACCCGGCCGGGACGCCGTCGGAGGCGGT 288617 28 100.0 33 ............................ TCCAGCAGCACGTTGCGCCGGATTCGGTTATCT 288556 28 100.0 33 ............................ CTCAATTTTGGTTTTGTCATCATCCAGCGCTCG 288495 28 96.4 33 ..............T............. CATTTACGGCCAGTGCCGCGTCTTTCCTGACCT 288434 28 96.4 33 ..............T............. CATCGATACGGGCGGCTATACCTCATCCACAGG 288373 28 96.4 33 ..............T............. CTGGATGCTCTGCTCTCGATAGTAGCGGACGCG 288312 28 96.4 33 ..............T............. CGGGGCTCACCTGCGTAGTTGTTGGCCGTCAGC 288251 27 89.3 33 .........G....T......-...... CATGATTACCTCGTATCAGAGCGGCCGCTATCT 288191 28 75.0 0 ..............T......T.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 35 28 98.4 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATTAATGAGCTGATGGGAGGAAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTGTTCGTCTCAGGCGTCAAATATTCGGTCGCACAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCGGGCCTGATGCTTTTTCGCAGTATTCCTCAACCGCCTGGATATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 299718-299018 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACRXS010000005.1 Klebsiella variicola strain Kpn01734 isolate Kpn01734, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 299717 28 100.0 33 ............................ TATCTACGGCATGCTGCTTGTCGCGCTGGCAAT 299656 28 100.0 33 ............................ CCTTATTTATTACCGCTAAAGACGTTTTAACTT 299595 28 100.0 34 ............................ CCAGTGCGTGAATCCACCGGCACCACCGGCCTGG 299533 28 100.0 33 ............................ CGGGGCTTACTGAGGCGATATGACAAGAGAACA 299472 28 100.0 33 ............................ TTGTTGACTACGTAGTGATGCGATTTCTGCAGT 299411 28 100.0 33 ............................ CAAAGTCTGGGACTATGAAAACGGGGACCGGAA 299350 28 100.0 33 ............................ CCAGCGAGTAACCGAACAGCAACTCAAGGATGG 299289 28 100.0 33 ............................ TGTTTACTACCGGAGCGTCCGGGAATTCTGTGT 299228 28 100.0 33 ............................ CGACGAAGAGCGCGGGCGCGAAACGGCGTTGCC 299167 28 100.0 33 ............................ TCCGGCTAAAGCTAACACAGCGAAGCTTGGCGA 299106 28 100.0 33 ............................ TCAGTGGACCGGCCAGGCGTATATCAATCTGGG 299045 28 89.3 0 .............A.....A.......T | ========== ====== ====== ====== ============================ ================================== ================== 12 28 99.1 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TCAGCGTTGGCCAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTCGACGGCGCAGCGCAGGATAATAGCCTCCAGCTCCCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGAAGTAACTACGCGAAGCCACGGAAGGCAAGCATCAGTACGTCGCGCTACGTTCTGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGGGGCGGGCAGGCCAGTAGGGTATATCGGTCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATATTTTTTATATGATTTTACTTATAAATATTCGTGAACTATGTTTGTTCTATACTTTCTTTAGGGACATCTAAATCGTTCGAGTTTCTTACTCGCCTGGAGATATTGTTCTTCATATTAATTATTTATAACTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGGTACTTTTGATTTTATAAAAAGTTATTTATAAATTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGACCAGGGTTTCGCTACAAAATCAACATGCCATAGCGGCGATAAGTTTTGAGAACTGCCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //