Array 1 127423-125686 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMNT01000007.1 Escherichia coli strain MOD1-EC6907 MOD1-EC6907_7_length_217977_cov_57.7245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127422 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 127361 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 127300 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 127239 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 127178 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 127117 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 127056 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 126995 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 126934 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 126873 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 126812 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 126751 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 126690 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 126629 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 126568 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 126507 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 126446 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 126385 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 126324 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 126263 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 126202 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 126141 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 126080 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 126019 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 125958 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 125897 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 125836 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 125775 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 125714 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154371-153122 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMNT01000007.1 Escherichia coli strain MOD1-EC6907 MOD1-EC6907_7_length_217977_cov_57.7245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154370 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 154309 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 154248 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 154187 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 154126 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 154065 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 154004 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 153943 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 153882 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 153821 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 153760 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 153699 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 153638 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 153577 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 153516 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 153455 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 153394 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 153333 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 153272 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 153211 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 153150 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //