Array 1 323-490 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSTK01000002.1 Streptococcus vestibularis strain OM08-1 OM08-1.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 323 36 100.0 30 .................................... ATGGCAGACCCATTAAAAAGGAGCAAACAT 389 36 100.0 30 .................................... TCATATGTATATTGATAGTTTTATTTACAG 455 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 98.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GCTCTATAATCTCTACAGTGGTTTTACCCACTACAGAAATTATAGAGCCGGTTAACAACCAGATTCAGCTCAAGCTTCCTGAAATCGGCTACGAAATTGAGCAAGCCACTATTAACAATAGCAAGATGAAGGTGAAGCTTAACATTCCGATTTCCTTGCCAACAAGTTGGTAATTTAAACTCCTTTGTTCAAAAATGAAATCCAAGACCAAGTCCAATTTGACTTGGCTTTTTACATGAGCAAAGTCGTTAAAGGGAGTAGTATTTATATTTTTTCTAGATTTCGGAATGATGGGTATAAAAACATCAAAATTTCATTTGAGG # Right flank : TTCGATTAAACTTAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACGCGATAGACATAAGGATTGTCAGGCTGTCCGACCTCTTTAACTTCAGTCAAATTGAGGATAGGTAGGCTCTGTTTGAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTTACCCAGGTATTGTCCTTGAAGGTTTGGTCACTTCCTCTCGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATAACCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCATGTCCCTTGTATTTGGCTAGCTCCTTGGTCATCTCCTTCTCATATGCAGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGAATAG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 29704-28090 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSTK01000009.1 Streptococcus vestibularis strain OM08-1 OM08-1.Scaf9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29703 28 100.0 33 ............................ CTGGTCACGCACACCAGAGAAGCACGACATCAC 29642 28 100.0 33 ............................ CACAATATATAGTTTTTGATTGTATTGAAAACA 29581 28 100.0 33 ............................ TAGACTCAATCCCTTGTTAATGGCTTTGATGTA 29520 28 100.0 33 ............................ TGACTATTATCTTTGGGCTTGACGTTGTTCTTC 29459 28 100.0 33 ............................ CGAAACCAGGAGCTAATGTAGGAGATGGTACAG 29398 28 100.0 33 ............................ GAAGAGATAAAAGAGAATTATGATTTTGTAACG 29337 28 100.0 33 ............................ CATAGCGTTAATTGTTGACTGACCAGCAAACTC 29276 28 100.0 33 ............................ CAAGAAATTCTTGATAATTTCATCCGCAATGGC 29215 28 100.0 33 ............................ CGCTCTACTGTCTGGACTGCCAGAGGGGACGAA 29154 28 100.0 33 ............................ CAGTACGACAGTGTTAACGTTGGGGATGATATT 29093 28 100.0 33 ............................ TGTACAAGGTTTTATCTACGATTGTATCAATCC 29032 28 100.0 33 ............................ CAACTGTTACACTGAACAGATAAGACAGATGAA 28971 28 100.0 33 ............................ CAAAATAACGCTACTTTCCAACAACAAACTACC 28910 28 100.0 33 ............................ CCCTATAAGTCAATGCCAAAGATATAGCAAAGC 28849 28 100.0 33 ............................ TTGTAGTTGAGAAGTTAGCAGTAGCATCCTTGT 28788 28 100.0 33 ............................ TATAAAGCAATGATAATTAAAATATATTTATCA 28727 28 100.0 33 ............................ TATAAAGCAATGATAATTAAAATATATTTATCA 28666 28 100.0 33 ............................ TTCTCGGAAACAGACGACTTGGTAACTACAGAA 28605 28 100.0 33 ............................ CTGAAGAAGAGTTGATTGCTTACCAAAGTGAGT 28544 28 100.0 33 ............................ TAGCTTTGGCGAGCAAGAAAATTGATAGATATA 28483 28 100.0 33 ............................ TGGCTTGTTATGCTTATACATCAACTCAAAGCC 28422 28 100.0 33 ............................ CACAGTAACCTATAAGACCCCTGATAAACCAAC 28361 28 100.0 33 ............................ TGCAGTTCCCGCTGTGCTTAGCAGTGATTGCAA 28300 28 100.0 33 ............................ CGAACGATTTGGTAACTACCGAATACATACCAA 28239 28 100.0 33 ............................ CGTAGCTGGTTCGGTTTGGGATACCATGAAGAA 28178 28 96.4 33 ..........................A. TGGTTCTAACGGAAACGATGGTCTGCCGGGTAA 28117 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATCATTGAGATTGGAGCAGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGGAGAAATTACCTCCTACAATTTTTAAATTGACAGGTATTTCTAAATCCTTATTAGATCAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTGTTTATTGGTGATTTAACTTTAGTTGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTTGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGGATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGTCATATGGAATCGAGGATTCAGTTCCTCATAGAGCTTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTTCATTGGGATCTTTTAGT # Right flank : TACAAATTTAGGTCAAATGGAGATACGACAATATCAATCGATTGGTTGAGGTCTCTTTTTAGATTTGTTAATTAGTCGATTACTTTTTAAGTATTGCCGTTGTAAGCAGCATATCTTAAAGATAGAGATGCTGTAAAACCTTGTCATAGAATACTACATATTGTTTTAGAGCGGTGTTTTTTTTCTAATGGTTCCAAAATAATCGCTTTCTCTTTATATGCCCACCAAAAAAAGAGCCAGTGGCTCTTTTTAAAAATGATCTTAATAACCGGGTTCAAAGATTTCAATAATTTGAGTCAGATAACCTGCATGTAAACCGATGCGATAGTCAACATTTGGCAAACTCTTTACTAAATCATTCAGTTCTTTATCTTTGCTAACCTTATCAGCCAAAACTGGTAATTCAACAACAAGGAGTTGTGAGTGATCTAGTTGAAGGTAACTACTATTGACCTTGACATCAGGACGAAGTAGTTTAAATATCGCTCTATCCGAAGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //