Array 1 19947-18447 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAGN01000030.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 19946 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 19880 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 19814 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 19748 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 19682 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 19616 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 19550 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 19472 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 19406 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 19340 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 19274 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 19208 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 19142 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 19076 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 19010 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 18944 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 18878 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 18812 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 18746 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 18680 36 100.0 30 .................................... CAAAGCTGCGGTATGTCGGGATTGTCTTCA 18614 36 100.0 30 .................................... GTTGCACTATTATTCATTGCATCATCATTA 18548 36 100.0 30 .................................... TGCGGTTTGCAACCAAACGCATATATTTTT 18482 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 23 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //