Array 1 55019-57892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHAS010000001.1 Listeria seeligeri strain F5761 NODE_4_length_280569_cov_43.2335_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 55019 36 100.0 30 .................................... ACATATAGTCTGCATTGCCCCAATCAATTG 55085 36 100.0 30 .................................... GTACCGAAACAGGTGAATTAGTTGATGTTC 55151 36 100.0 29 .................................... GACTTGTCCAACTGGTATCTCCTGATATA 55216 36 100.0 30 .................................... ACAACGAAGCAGTGACTATTATCCGCACCG 55282 36 100.0 30 .................................... TATCTAAATCGAATTGGAGGAAATAAATAA 55348 36 100.0 30 .................................... AATATAGGTGCAACGTTGCAATAAAAAACA 55414 36 100.0 30 .................................... ATTAGCAGGAGCTGGCGGAACTGGTTTGTT 55480 36 100.0 30 .................................... CAGTATTTTGAGTGTTCGTATACTAAGATA 55546 36 100.0 30 .................................... CTCCAGCAGCGGATAGATCGCCGGTTTTTA 55612 36 100.0 30 .................................... AGCAGTATCTAAAGCTACTTTATATACGGA 55678 36 100.0 30 .................................... ACATTGCTATTGTGGAACCATATCCAACTC 55744 36 100.0 30 .................................... TATCTTCAACGGTTACATGAATATCTAAGT 55810 36 100.0 30 .................................... TTTATGCCGCTTCTCCATTTCTTCCTCTGG 55876 36 100.0 30 .................................... TTCATTGCCACACCAGACGCGTTATTAGCA 55942 36 100.0 30 .................................... TAGTCGCCTTATCTGCCCCTTGAAATAGTA 56008 36 100.0 30 .................................... TATCGTCTTGCTGATACAAATTGATAACTG 56074 36 100.0 30 .................................... TTGATGGGACACCTCGTATTTCATCGTGAT 56140 36 100.0 30 .................................... CGAAATATTAATCGGAATAGAACCTGTTTT 56206 36 100.0 30 .................................... GCTACTACGAAACTGTTTTTCACTGCTGTA 56272 36 100.0 30 .................................... GCAACGCGTTAAATATCGTAGCACTAAAGA 56338 36 100.0 31 .................................... TCTGGTGAATATGCTAATAAAACTGATTTCA 56405 36 100.0 30 .................................... GACACGTCAAAGGTGAATTGGCTGGTCAAT 56471 36 100.0 30 .................................... TAGCTCTTGACATTTTCAAACACAGGTTGA 56537 36 100.0 30 .................................... TCCGATTCTAAATCATTCATTAAATAAAAG 56603 36 100.0 30 .................................... CAGTACTTACTATGCTCATATACCAAGATA 56669 36 100.0 32 .................................... TATCGTAGATGAAATGCTTGTCGATTATCTGA 56737 36 100.0 30 .................................... CAACTACATCATAGCCAAAAGTACGCCCTT 56803 36 100.0 30 .................................... TGATTGCAAAAAACAGTTCACTCGAAAAGA 56869 36 100.0 30 .................................... TTTTTAAGATATTCTTCTACTCTTTTTACT 56935 36 100.0 30 .................................... GTTTCGCAAAGTATATGCATAGAACTCTGC 57001 36 100.0 30 .................................... TCAACAGGCCTGTGTTTATATTCAACTTCG 57067 36 100.0 29 .................................... TTAATAAGGAGTGATACCATGCCAGAATG 57132 36 100.0 30 .................................... ATACTGAAAAGGTGTTCCATATCAGATTCA 57198 36 100.0 30 .................................... AATATTAGGCATATACTTGTTCTCTGCTGT 57264 36 100.0 30 .................................... TACGAGGATAACCGTTTCAAAATGGACGAT 57330 36 100.0 29 .................................... TCTGTTGAGGATGCAATTCCTTTCACAGA 57395 36 100.0 30 .................................... GATGCAGCGCAAGTCATCAATAATAATTTT 57461 36 100.0 30 .................................... GTGATGAATGCGACTTCTTGTAATGTAGCA 57527 36 100.0 30 .................................... TCTTTAGCTAACCATACTGACCACGTATTA 57593 36 100.0 30 .................................... GAATCCGTGACAACAAAGTAGACTCAAAGA 57659 36 100.0 30 .................................... CATAATCGTCGAACACCGGAAGTAATTGCA 57725 36 100.0 30 .................................... TCACGAGTGTAATATAATCCTTCTCTAGGT 57791 36 100.0 30 .................................... AAGTTGGTAGCTTGGTAAACACCTTTACCA 57857 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 44 36 100.0 30 ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Left flank : TTTTTGTTAGATTAAAATGAAAACATGATTAAATATTTCCATTTTTCCGTTTTCTATTTTTCCAGTTAGCTAATTTTGAAAAAATATTATATCTGACTCAATTACTACGTTCATTATAGTTATAGAGCCCCACTCTTGCAAGCGGTTACAAGTATTTCGAAAACGGTTTTCGCTGGACGAAAAAAATGGGAGGTCGGGGGTGGAAGTAATAAAAAGAAGGGGAATTGAATGGAAATATCCCTAGACATGGTTGTTTAATTTAGGGGTGCTCTTTATTAATTCATTTTTGGAGCAGATATTTTGGTTGTTTAGGCAGCTTGCAATTGTATTTTAGTTCCTCAGCATCAAACCACATTTTTCTAGTAAATCTCTTGCAGGTCTTTGTTACTTTCCGCTTCCATCTTTCTTAAGGAAGCAAATGTTGATGGTTTCATCTCATCATTAAATAAGTATACATTTACCTATTTTCTTCAGTCGCTTAGCATTTTTCATCTATTGAA # Right flank : TGTCTTTTCCATTATACCTCAACCTAAATCAACCTATCAAGGTAAACAATAATATTTGCAGGAATTCCTTTGTAGTCAACGATAATTCGCCATCCATTATAAATGAAAATAAAATAAACTAATACAAATACAACTAAGTTATCCACAGCTTCTAACTTCAATTCGACCGTTTTCCCACCATAGTTATCCACAGCTAACATAGACCAATTTATCGCTTTTATCCAATCCGATTCTTCTACGATTAAAGGTATCTTTTCAATAATTTGTTCTTTTTTAACCATAATTTGTAATTCATTAGCAATATCACCAAAATAAAAATGGTTAATTGCACCATCCATCCAAATATGCTCAGAAATGATAAATACATTGATTCCTCTTGTTAACATTTTTTCAACATGTGATTGAAATTTCTTTATTCCCTCCTCTGAAATTATAGTTTTTTCTGGCATTTCTATAAAAAATAAAACTTGTTTATTAAATAATTCCTTTGTATACATCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //