Array 1 67146-65628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGEL01000032.1 Bacteroides fragilis str. S23L24 gbfS23L24.contig.31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 67145 35 100.0 33 ................................... ATCCTTTGTTTATTATAATTTCGATTATTAACC 67077 35 100.0 33 ................................... TTATTTCTGATTTTGCTTCTTGCTCTGACAATC 67009 35 100.0 37 ................................... TATTCTTTGATGCCGTGATTTATCACACGATTAAACC 66937 35 100.0 36 ................................... AGTAAAAAATTCCTAAAAACAGAACTATGGAAAATT 66866 35 100.0 35 ................................... AAATCTCGGAAGAACTTATTACAGAGTTGTCAGTC 66796 35 100.0 37 ................................... CCACGATTTATGTCGAGGTCGTAAAGAGAGAAGGAAT 66724 35 100.0 39 ................................... AAAGGCGAAGAGACAATTGTAAAGTCCTCTTCCTTTTAA 66650 35 100.0 34 ................................... ACTTACTGTGCAATGGCGGCGAAGCACAAAACCT 66581 35 100.0 34 ................................... ACGGAATTTTTATGATAGACAATGCTCCAAAAGT 66512 35 100.0 37 ................................... TAAAAAATTAACTCCGTATTTGGGAAATGCCAAAACG 66440 35 100.0 34 ................................... AACCTTATCCAAGAAAAAAGAAATCGCTGCTGGT 66371 35 100.0 33 ................................... AAATATGGCGCTGTTTTGGGTCTCGAAAAAAGA 66303 35 100.0 37 ................................... TTCCTATTTCGGCAACGTTCAATTGAAGTGGGAACTT 66231 35 100.0 36 ................................... AGAAAATAAGGAGCGAATTGCAGAGGTTGGCTGAAA 66160 35 100.0 36 ................................... ATATTTTGACGTGGATTTGGAATGCAATCATATGGA 66089 35 100.0 38 ................................... GCAGCTTAATAGAAAATGTGAATGATCTTGGTTTTGAT 66016 35 100.0 35 ................................... TTCAGTCGGTATCAAATGGAGATTAAAATCCAAAT 65946 35 100.0 36 ................................... TTTGCGAGACGAGATAAAGAAATTTATTAATCAGGT 65875 35 100.0 35 ................................... TACAGGGATAAATTTTGATTATGAATTGCCGAAAT 65805 35 100.0 39 ................................... ATTATGCGAGACCGGTGGTGGGCAATTAAAGAAAAACTT 65731 35 100.0 34 ................................... TTGAAGAAATCAAGTCAATTCTCTTCTAAATTTC 65662 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 22 35 100.0 36 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGTATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAACAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 777-1897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGEL01000056.1 Bacteroides fragilis str. S23L24 gbfS23L24.contig.55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 777 47 93.6 30 ...A......A.............................G...... TTGATAAATGCGAGTACGCAAACAAACTGT 854 47 100.0 30 ............................................... AAGCCGGAAGAAAAACAGGCTATCACTTAC 931 47 100.0 30 ............................................... AACCTTGTCTATTATTACCAATAGCGTTAA 1008 47 100.0 30 ............................................... ATGGATTTCGTAACAAAAAACAGAAATAAT 1085 47 100.0 29 ............................................... AAGTAGAAGAAGCAGTGCCAGCTGAACCA 1161 47 100.0 30 ............................................... TAGCTGCTAAATACAGTAATGAAACACTTG 1238 47 100.0 30 ............................................... CTTCTCGGTACGGTAATATCCCCGTTTGAC 1315 47 100.0 29 ............................................... TCCAAAGATCTTTGTTCCAGTTAGCATAT 1391 47 100.0 29 ............................................... CACGTAATCCAAAAGCGGTGTAGCGTGGT 1467 47 100.0 29 ............................................... TCTTTACTCAGCAGGCCTACGGCCGCTTC 1543 47 100.0 30 ............................................... TTCTTAACCGATTTAACGAAAGGGTTGCAG 1620 47 100.0 30 ............................................... AAACCGTTCAAATACCTACGCAATTGCGTA 1697 47 100.0 30 ............................................... TGTTATTCTAAATTCGACTGTCAACGTGCC 1774 47 100.0 30 ............................................... ACGATGCGTTTCAAAAAGTACAAAAACGAC 1851 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 99.6 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GGTGGGAAAGACTTTTATTTCAGGGATGGAAAGAACAAAGCTTTTGCTTCTAAAAGACTTGTTCTTTGAAAACAAAAGACTTGATTTAACAGCGTGTTAAATCAAGTAATAGGAAGAGAGGAAACAAAAGGAGAAAAAGAATTGAAGATGAAGACGATAGAGAAACGAGGGAGTATCTGCCCAAAAAAGGATAAGTGCCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CAGATTTTACATAACATATTGTCCTTCAATAAGTTAAGAGTAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //