Array 1 29248-26891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDFB010000022.1 Riemerella anatipestifer strain xi1 Scaffold22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 29247 47 100.0 30 ............................................... AATGGACCAGCGAATGATCCAAATGGTCGC 29170 47 100.0 30 ............................................... AGAAGATTAGACTGGAAAGAAAACATATTT 29093 47 100.0 30 ............................................... GTTAGAATAAAAATTAACGAGTTAAATGTA 29016 47 100.0 30 ............................................... GTAGTCTTTGCGGTTGTGTTCTATCGTACA 28939 47 100.0 30 ............................................... GACTTTTTCCCATTCTTTAGAAAAGGAATG 28862 47 100.0 30 ............................................... TGCTTCTGATGGCTCTTCTCCTAATTTTTC 28785 47 100.0 30 ............................................... CAAATAGAGGCGTGAAGTGTGAAAGTACAA 28708 47 100.0 30 ............................................... GGTAAGCAGATATACCTTCCTAAAAAATTG 28631 47 100.0 30 ............................................... TATAGGATTTGACGATGTTAAACAGGAGAA 28554 47 100.0 30 ............................................... AATGAGTTCAAAGTAAAGGAAGATACAGCT 28477 47 100.0 30 ............................................... TTTCTAACTCTTTTTTTATTTTTGACTTTG 28400 47 100.0 30 ............................................... TAAGGGTTTAAGAGGTGCATTATCTATAAT 28323 47 100.0 30 ............................................... GAGGCGAAAGTGGAGGCTACAAGGTTATAG 28246 47 100.0 30 ............................................... GGGTTATCTATAGTTTCATTTATTCTAGAG 28169 47 100.0 30 ............................................... TGTACGGTTTCTGTTGTTATGGTAACCTCA 28092 47 100.0 30 ............................................... ATAGTGTTTGTTTTACTATCTATGCTGTGA 28015 47 100.0 30 ............................................... ATGTCAATATGGTTAGGAGAGGGGAGAAGT 27938 47 100.0 30 ............................................... TTCCTGTAGCTCGGCAGGAAGCTCGTGGAA 27861 47 100.0 30 ............................................... TATTTAGAAATAGAACTCTTGGGTCTAACC 27784 47 100.0 30 ............................................... AGACTTAAAATGATTGGCACTAACGGAAGC 27707 47 100.0 30 ............................................... TTATTATCAAAAGTTATTTTAAAGCCAAAT 27630 47 100.0 30 ............................................... AATCGGGCTTTGCCCCAGTAGCACAGGCGC 27553 47 100.0 30 ............................................... TGTCGTTCGGGTTTTACGACTAAGACTTTG 27476 47 100.0 30 ............................................... AACCTCGTTAGGGTTAAGTTATGTTAATCA 27399 47 100.0 30 ............................................... GTCCAGGCTATGGTTCTCCAGATAAAACAG 27322 47 100.0 30 ............................................... AAGCAGATAACGGAAGATTTCAACGAGGGT 27245 47 100.0 30 ............................................... TAGAGCAGGTTTTCATTTGTATTACTATCT 27168 47 100.0 30 ............................................... TAACCCACTCCTCTTCGTATTCTTCATTCT 27091 47 100.0 30 ............................................... TATTTTGTTCTTGCACACATAAAATTTCTG 27014 47 100.0 30 ............................................... ACTACGGAGCTAACTAAATATAAACAGCTC 26937 47 91.5 0 .........T..............G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 31 47 99.7 30 GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGTATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 53-1350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDFB010000095.1 Riemerella anatipestifer strain xi1 Scaffold95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================= ================== 53 35 83.3 81 .....T..........-.....CT....T...G... TCCGCTGAAACAACAACAAAGCTTGTGAGCTAAAATGAGAGCAGTCCCAACACTCACAACAACTTAAAATACCAAAATAAA C,A [78,85] 171 35 86.1 81 ................-.....TT....T...G... TCTGCTGAAAACGACAACAAAGTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAA T,A [196,203] 289 35 83.3 80 .......G........-.....TT....T...G... TCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAATCCCAACGCATTATCGTACTCTGTAACACGAACGGCA C,A [314,321] 406 35 86.1 80 ................-.....TT....T...G... TCCGCTGAAAATATAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGATTGTCGTTTTAAGTGTGATACCCACAAG C,A [431,438] 523 36 100.0 30 .................................... ATAGAATTGCTCCCAAAGTTTTCCCAAATC 589 36 100.0 30 .................................... AAGCGTAGTGTATGTATTGATAGATATAGA 655 36 100.0 30 .................................... AAAATTGCTATTATTGCAAATATAGCTGTT 721 36 100.0 30 .................................... CCATAAACTCGGCAAGATTTGGAATGATGA 787 36 100.0 30 .................................... TCTCAATGAATTAAATAATTTGTATGTGAA 853 36 100.0 30 .................................... CCTGCTCTTTATGAATAGCCACTTCCTCTT 919 36 100.0 30 .................................... CCTCCTTTTGGATTTTCTTTCATCTCTTTA 985 36 100.0 30 .................................... GGCAGGTATGGATGGAAGCCTGTTCATGGA 1051 36 100.0 30 .................................... AATCCATCTCCAGCTACAACAAAAAAAATA 1117 36 100.0 30 .................................... TTGCAAATAGAGAATTGTTAGGATTGTATG 1183 36 100.0 30 .................................... TGCTGAAATAGAAAGATTAGGTGTTAATGT 1249 36 100.0 30 .................................... GGTAAGCACGGCTATATACTGGCTTTGGTA 1315 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================= ================== 17 36 96.4 43 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : CTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATATG # Right flank : CTGGTACTCCAGTTAGTTTTTCAGCTTCTGCGTTGTGAATACCCTTCAAATGCTGTGCATTATCGTTATGATAGGGTATTGTCTTTTTTGGGGTGCTTGTTTTATCTCGGTGTTTCAAAGAACGCTTTTCTTTACAACGCTCTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTTGCTCAACTCCTGATGCAGCTCCTTCATTCTGGTAGCCACCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGTTCTGCAAGTAGGAGCTTATAAACGATACTACGGTACTCAAAAAACTTATCAGCAATTTCCTTAGACAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGTTCCCTTAGAAAGGCTTGGGCATTGGCTCGGCTAATATAATGAATTTTATGCTTTTGCCCTTTGGAAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACG # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.86, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //