Array 1 19545-17878 **** Predicted by CRISPRDetect 2.4 *** >NZ_POUD01000102.1 Nonomuraea sp. KC333 NODE_102_length_27877_cov_66.0198, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================== ================== 19544 30 96.7 31 .............................C GTCCGGAAGCGTTCCGGGCCGTTCGAGAGCG 19483 30 96.7 31 .............................A GGCCTGAACCTCGGCGCGCTGGCCGCCCGGC 19422 30 96.7 31 .............................A GGTTCCCGGCCGCCTGGTCGTTGGCGACCTC 19361 30 96.7 31 .............................C AGTCGATCTTGTCGCACTTGCCAGGCTCGGC 19300 30 100.0 31 .............................. GTTCCACGTAGTGCTCGTGAGCCGGCAGCAG 19239 30 96.7 31 .............................T ACGGAGGCCCCGGGGGCAGATGCCCCCGGGG 19178 30 100.0 31 .............................. GGACTCACCTCCCCGCCCGGTAGGGCCTCCA 19117 30 96.7 31 .............................C CGCCTTCCGTGGCGTCCGTCGTGGTGAGCTG 19056 30 100.0 31 .............................. TCTGCCACTCGAACTCGATGCTGTTGGTCTG 18995 30 100.0 31 .............................. GTGTGGTCGCGATGGCACTGATCTCGATGGC 18934 30 100.0 31 .............................. TGCTCGACTTGATCGGCTGGCCACGGCTCCC 18873 30 96.7 31 .............................A GCCGTACGTCACCGTCTACAGCGGGGTGTGC 18812 30 100.0 31 .............................. CGCCGGCGATCTCCTCGCCTTCCCTGGGCGC 18751 30 96.7 31 .............................C CGAGCCGGACGTTGATGCTGTTGGGGCCTGA 18690 30 96.7 31 .............................C ACTCGGCGCGGTAACGGGCATGCGCCGACGC 18629 30 100.0 31 .............................. CGATCAAGGCCGACCTGCACGAAGCCCTGGA 18568 30 96.7 31 .............................T CCGACAGGCTCACCCATCCGAGGTGCAGGCC 18507 30 96.7 31 .............................A GGTCGACCGGCCGCAAGGTCATTCGTGCTTC 18446 30 93.3 31 ..................A..........T TCGGTCGCGCCGGCGGTCGCTTCCCCGGCCT 18385 30 100.0 84 .............................. CTTCTGACCTGCTGTGCCACACTACGCGCAGGTGCTCCCCGGGGATGGTCCCTCTTCTGGAAGGTGGCCGGCAACTCTGAGCCC 18271 30 96.7 31 .............................A GCCGCTCCCGGCAGTCGTCCCGCTCGTACAG 18210 30 96.7 31 .............................A GACGTGGCTCGACCTCACGCCCGAGGCGTTC 18149 30 96.7 31 .............................C GGTGCGTGACCCCACCACGCCCGGTCCGTCT 18088 30 96.7 31 .............................T ACTACGTCGGAAAGGGCCTGGAGTACTCCGG 18027 30 83.3 29 ......................GCAC..G. CGGGGTCACCCGCCGCCATCTCACAGAAA 17968 30 93.3 31 ........................A....T CGATCCACTTCACCAGGGACGTGATCGTCTT 17907 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================================================================== ================== 27 30 97.1 33 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : TTACCAATGTCATGAGTGGTCGCCAGCCAAACCGCCAACCGGCGCCCGTCCTCCAAACCGGACGGAAGATCCTGAGCGATCACATGCTTAACCTGCAGCGGCAGCCAGCGATCCCACAACAATCCGGCTACCGCACCGCTATCGGCCATGTGTCGCCATAACGGCAACCACCCATCAGTATCCCGATCGTGCTTTGCCCAGACAGCGCATGCCTCATCGGACAAACCGTCCTGGAATTCGACTGGAGGTACCCCCTCAAGGAGCATGAGAGACATCTAAGTGCATAACCACAGCGAGATCACGCCTTTTGAGAAACAAACCTGCCGAGCGCATACCGACGCATGTCCATCCACGGCCGGCCGAGTTGCTCCAGAGCCGACATTGATGCAGCCTGAGCGGACTCGCTCGTCAACTTGACAACCGAAACGTCCAATATGTCCACTTCTAAAGAAGTGCTCAATTCCGAGCCTGATAGACGACAACGCCGCAGGTCAGGAAGA # Right flank : CAGGCGCGCTGTGCGCGCGGATGTCCCACTCCCTGCGACGCACATTCGACCGTTGACGCAGGAGAGCCGCTATCCGAAGTGGTGAGGTGTCCGACCCACGTGTGCCAAATACGTGCGCAGCGATCCCCCTGCAGCCGTGGTCAGGCCCTCTTGACCTGGGCAAACGTCCTGCACGCTCATCTGACTCCTAAAGCGGGTGCCGCAGGTTCGAATCCTGCCGGGGGCACGCTTCTCCACCAGGCATTTTGCCTTCTGACCTGCGGTTTCTCTGCCGCAGGTCTTTTGCTTTCCAGGCCCCGGATAGGTAGCCGAGGGCACCCGTATGCAGCCGTAGGACCTTGATCACGGGATATATACGGGATGATCTTGGCTGCGTTTCCCCAGCTCAGGGAAACGTTCGGCTTCATTGCGGAGGCAGAGGGAGCTGCCGCAAGGACGGGAAGGGGAGACAGCACACATGGCTGCACAGAAGGCAGGGCTGCAGGAGGGCTGAGCTCGGT # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1183-3045 **** Predicted by CRISPRDetect 2.4 *** >NZ_POUD01000095.1 Nonomuraea sp. KC333 NODE_95_length_28873_cov_67.632, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1183 30 96.7 31 .............................T TCCCCGATTCGCTACCCGGGGATGGTTAAAG 1244 30 96.7 31 .............................G GCGCCCGCTACCAGGCCGCCTGCCGTACCGA 1305 30 96.7 31 .............................G GATGCCCGCTGATCTCGCTCGGGTGGCAGCC 1366 30 100.0 31 .............................. ACTCAGCACGCAGGCGTATCCGCTTCTGGCG 1427 30 96.7 31 .............................G ACGCCGAGATCTGCCCCGGCGGTTGCGGCAT 1488 30 96.7 31 .............................T CGTCGGCCTCGACAGGATCGCCAAGCGATGG 1549 30 96.7 31 .............................A GGCCCCACACCATTCCTCCCGGTGCGGGGCC 1610 30 100.0 31 .............................. CTGGCCAGGCGGCCCCGACCCGGCCGGCGTC 1671 30 96.7 31 .............................G GTGTAGTGGAACTCCGCCAGGCCGGCTCTCT 1732 30 100.0 32 .............................. ACGTGCAGGCGTTCCTCGTGCACGAGCGCGAG 1794 30 100.0 31 .............................. TGGGGGCCAAGCTCCAGAAGATCAGCAAGGC 1855 30 96.7 31 .............................T GACCGAAAACCGTGTTCGGATCTTCGGAAAT 1916 30 96.7 31 .............................T GCCAGGTCACACCCGCCGAGCTGACGCCACG 1977 30 96.7 31 .............................A AGCCGGCACCTCAGTTCATCGACGAGGACGC 2038 30 100.0 31 .............................. GCAGGATCTTCCGCCGCTCCGCCTTGTTCGT 2099 30 96.7 31 .............................T CAGCTTCAAGATCGATGTTCGAATCAGAAAG 2160 30 100.0 31 .............................. CGGGCCACGTGTGGCTGTACGTCAATCCGAA 2221 30 96.7 31 .............................G GCTCGTTTCAGTGCCCTTTTTGGGGTGTCGC 2282 30 96.7 31 .............................A TCTGGGCCTGCGCGATCTGGAACGGCGTACC 2343 30 96.7 31 .............................G TTACGTACAGCCAGGACTTCCGTATCCAGCA 2404 30 100.0 31 .............................. GCGTCGACCAGCTTCCGTGTGTTGCCGAACA 2465 30 100.0 31 .............................. GGCATTCGAGTCTGGGGCGAACATCACAATT 2526 30 93.3 32 ........................T....T TCTCCCAATGGTCCGGAAGCTTGTCCCCAGGG 2588 30 96.7 31 .............................G GGAACCCGCCCACGGCATCGCTCCACGCGAG 2649 30 96.7 31 .............................T TCGCGAACAACATCACCGAGCTGGCGAAACG 2710 30 96.7 31 ........T..................... GCGACTCCCCCACTGCCTCATCTGCGGTGAC 2771 30 93.3 31 ............T................T TCTGAGCCTCAGGAGAAAGCAGAGACATAGC 2832 30 93.3 31 ..........................T..T CCAGGACAAGCCGACCACGGCGTTCGGCGAC 2893 30 96.7 31 .............................G TCACCAGGGTGGTGGCGCCGAGCGAGACGGC 2954 30 93.3 31 .................C...........T CCAGCGACAGGCTGCTCATCGGGTCCACGTC 3015 30 90.0 0 .....T..............A........T | G [3037] ========== ====== ====== ====== ============================== ================================ ================== 31 30 96.9 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GCCACAACTACGCCGACGAGGTTCCCTGGTGACGGTCATCGTGCTCACTCGTTGTCCCGTCGGGCTCCGCGGGTTTCTCACCCGCTGGCTGATGGAGATCTCTCCTGGGGTGTTCATCGGCGGCCCGTCGGCGCGGATTCGCGAGCAACTCTGGTTGCAGGTCCAGCAGTACGCCGACACGGGCCGAGCGCTCCTTGCCTACACCACGGACAATGAGCAGGGCTTCGCCTTCGAAACACATGATCATAAGTGGCATCCCATCGACCACGAAGGACTCATCCTGCTGCGCCGGCCGAAGGAACAGCAGGCCCAGCCGACCAACGAGCCACCGCGCAACTGGAGCAAGGCGGCCCGTCGACGCCGCTATGGGCAGCGTTGAGTGCGTGTCGTACCTCGCCGCCTACAGGCGACGGAGATCACCAGCGCAGTCCGAAATGCCCGAATCTGCAAAAGTGCTCCAAATTCGCCTGTCAGCGCACTAGCCATGCAGGTCACCGAGG # Right flank : TGAGCGCACAGGGACCACCCCGAGGTGGATTGTTAGCGTGCTCGACTGCTTTCGTCGTCGTCCCAGATGAGGATTGTTCGGTCGGCGGGCAGGATGCGGTTGCGCTTGCGGGGCTGGTTGATGACGAACACGGGGACGCCCTCGGGGATGTCCAGTTCCTTGCGCTCCTCGGGGGAGGGCATCCGGGCGGTGATCTCCGCTGACCGCTGTACGGCGACCCGTTCGGCGGGCACCTGCGGCCGGACGTAGGAGCCTTCACGCTTCACGGTGACGATCAGCCCCTCGCTGCGCAGCACACCCAGTGCCTGCCGTACTGCGACGCGGCCGAGCTCGTACTGCTGCATCAGCCGGGTCTCCGAGGGGAGTGCCTGGCCAGGCTTGAGCCGGCCAGCTGTGATGTCCGCGCGGATGATGTCGGCCAGCTGGCGGTGCACAGGTCGATCGGAACCGAAGTCGATCACAAGAGGTCATCATCACAACACCACTACCTCATATGGTCT # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20992-20170 **** Predicted by CRISPRDetect 2.4 *** >NZ_POUD01000095.1 Nonomuraea sp. KC333 NODE_95_length_28873_cov_67.632, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 20991 30 93.3 31 ...............A.............T TCGCCCGCGTCCGCCAGTTCGCCACATGGGC 20930 30 93.3 31 ...............A.............T GCTTCGGCCTGATCACCCAGCGCTCGGCGAT 20869 30 96.7 31 .............................T TCTCCTCCACCTCGTCGACTTCCAAGGCGGC 20808 30 93.3 31 .....G.......................T GGTAGCGCAAGGGCTCAACCCCAACGACCCA 20747 30 96.7 31 .............................C GCGGCAACATCTCGCCGGGCCAGTTCCAAGG 20686 30 100.0 31 .............................. ACTGGGCGCCGCCTGCTGCCAGGGCGCTGAT 20625 30 100.0 31 .............................. TGTGCTGTTCGCGGTCCTTGCTGGCGTACAG 20564 30 93.3 31 ..................A..........C AGCTCATGGACCAACTGCTCGACATCGAAGA 20503 30 96.7 31 .............................G CGCCGCCCAAGTGCACCGCCACGTACCCGGC 20442 30 100.0 31 .............................. CATGGCTGTTGTGAAGCGCCGTCGCACCGCT 20381 30 96.7 31 .............................G ATACGCTGAGTCCTCGCGTGTTGGTTGCACG 20320 30 100.0 31 .............................. ATGGCGGCTCCGGAGAGTGTTCGCGCTACCC 20259 30 96.7 31 .............................C GGATCACCCTGCATATCCAGGAGACCAGCCC 20198 29 86.7 0 ......................G..-..TG | ========== ====== ====== ====== ============================== =============================== ================== 14 30 96.0 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : CGCACGATCGGCCCGATGGTCGAACAGATCGATACCGACGTCGACAGGCCCTGCCGAGCCTTCCGAACGGGCAAGGTCTGGACAGGCCCCACCGCCAAGCAGTTCGACGCCCAACTCAGCCATTTCAGTACGCGAGCCCGCGACTCCGGACGGGCCATCATGGACGAATTGCGGCAGACGTTGAGCCGTACCCCGGGCAGGGTCACCGAGGAAGAAGCCGACGCCATCAAACGGAAGTACAGACTCTCCTGACTTCGACATCATCGTGGCCCGCCTATGCCCGCCGGAACCGCCGGTAAGGTCCTTGATGCTCGGATGCCGAACGCCCTACCCGATCTCCCGCGGGCAATCACACCAGGCACGTAAGCGCGTGCCATGCGAGACTGGGCGAGACCATCGGACAGCCACACGCCCAAACGTCAGCGAGAGTCCGTAATGTCTGATTCCGTGAAAGTGCTCGAAAACTGCCTCAGCGACAGCTAAATGCCCAGGTCGCCGAG # Right flank : CGTATGGGCTGAAACGTCTCGTTGCATCTTAAGAAGCATTCCTCAAGCCAGAGCCTCCGAGATTCGGCGCTTGGCGATCTCATCTTGGCCGACGATGCACTTGGCGTAAATGCGCAAGAGGACGTCCACGCTGTGGCCGGCCCACTCGGCTACCTGAGGTGCTGGAACGCCGGCGTTGAGCCAGGTGGAGACGCAGGCGTGTCGGAGGTCGTACGGCCTGGCAGCCAGAGGCGATGTGAACTCCTTCTCCGTGAGGGCTGTCTTGCGCGCGGCCTTCCAGGCTCGTCTATAAGTGATGAACGGCAACTCCCCACCTCTCACACCGGAGAAGAGGCGTCCGCGGGAACCGTCGCAGAACTCGGCCAGATGGGTGCGGAGGATGGCGACCAGCGGCGGAGGAATGGGCACCGTCCGGCCGTGGCCTTGGGCGCGGTGTTTGAGCGCGCGTTCCTCGCGAGCGGTTCCGCTGTCGGTCCATTCGCGGCCGGAGTACGGGGCCG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 24830-24432 **** Predicted by CRISPRDetect 2.4 *** >NZ_POUD01000095.1 Nonomuraea sp. KC333 NODE_95_length_28873_cov_67.632, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 24829 30 96.7 31 .............................T TCGGGCTGGACATCCGCATGGGGCGGGGCTC 24768 30 96.7 31 .............................T CTGGGTCAGCCATCTCCCTCCCTGCGATTTT 24707 30 100.0 31 .............................. AGGTCATCGCGGGTTCGCCGTGGGGCGTCAG 24646 30 93.3 31 ....................A........A ATCCACGACGAGAGGTTGCGCGAGCGCCTCA 24585 30 100.0 31 .............................. TGTTCCTCTACGGCCCGTCGTCGCCGCCGCG 24524 30 96.7 31 .............................A TCCCGTCGAGGCGCGACCCCAAGGGCGGCCC 24463 30 93.3 0 .....G......T................. | A,T [24435,24439] ========== ====== ====== ====== ============================== =============================== ================== 7 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : AGTCGGCACAGCCGTTCGTGGCCACGCTGGTGCGCACCATCTTCGATCAGCCCGACAGCGCCTCGGTGCGCGCTCAGCACGCCTGGGTCGTGCAAACGCTTGAGGCCAAGCATCCGGCCGCGGCCGAGCACCTGGACGCCGCCCGGGAAGATTTGATCGCCTTCGCCGCCTTTCCTCGTGAGATCTGGCCGCAGATCTGGTCGAACAACCCGCAGGAGCGGCTGAACAAGGAGATCCGCCGTCGCACCGACGTGGTCGGCATCTTCCCCGACCGGGCCTCGATCATCCGGCTGGTCGGTGCCGTGCTGGCTGAGCAGACGGATGAGTGGGTCGAAGCCAGACGCTATATGGGCCTGGACGTCCTGGCCAAAGCCCGTGTCCGGCTCGTCGCCGACGACACACCAGCCCAGAACCCGCTCCCACAGACACTTACCGCTTAACCTGCAGAAACAGGATCACGCGAAGATCGATTCATACACCACGTCCGTGGACGTGACCGA # Right flank : AGCACCCTTGACGTATTGCATGGCGCGAGTGTCGCGTTTGGTGAGCGGGGCACTGGTCGTTTCGGGATTTTGGTGTGGCTGTGTGCTTATGAACCTGCGGAGCGTGCGGTGCGTACGTCCTGGCGTCTGGGCGTCTCAGAGCCAGGAAATGACCATGCTGGTACGTTATGCGCCCCTCGCGGGGACAGTTGGACTGGGGGACAATCCGGTTGTCCTCGTACGTGCTGGAGAACCGTCATGACGACCCCGCCGTCACCGACTCCCCAGGCGTCACCGGAACAGCCACCGGCCGAACCCTCTCCCCGAACCGACACAACGCCGGTAGGACCGTCCTTGACGCCACCACCGGTCGCTCCACCGCCCGACTGGAATTACTCGGGGATTGACCCGAAATTGATGCACGACTTCGAGCGCGACCTCGGCCAGGCCGAGACGACGCTCGGCAGGACCGAGCCGCAGATCCGCCGGATGTTGCAGGACCTCGATCTGGATACTTCACG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 28455-26289 **** Predicted by CRISPRDetect 2.4 *** >NZ_POUD01000095.1 Nonomuraea sp. KC333 NODE_95_length_28873_cov_67.632, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 28454 30 96.7 31 .............................C TCCCCCGGCCAGCATTTCGAGAATCATGACT 28393 30 96.7 32 .............................C CGGAGATCATCTGGGACCACGCCGCCGTGCTG 28331 30 96.7 31 .............................A GTTCACTAACTTGCCGCGTCAAGCCGGAGCG 28270 30 96.7 31 .............................T GACCGTGGGCGCCGACGATGGGGAGACGACG 28209 30 96.7 31 .............................T GACCGTGGGCGCCGACGATGGGGAGACGACG 28148 30 96.7 31 .............................T GACCGTGGGCGCCGACGATGGGGAGACGACG 28087 30 100.0 31 .............................. ATGCCGGGTGATCCTCACGTCTCATCACCAA 28026 30 96.7 31 .............................T GACGAATGACCTGCACGTCAGCCGGCAGCGC 27965 30 100.0 31 .............................. GCAAGCCGGTCGAGGGCGAACGCGACTATAA 27904 30 96.7 30 ............................G. GTCAGGCCTGAACTCGGCGCATTACGCGGT 27844 30 100.0 31 .............................. GGCCCCGCTGCGAGAGCGGCGTCCTGTTCTT 27783 30 100.0 31 .............................. CGTTGCACATCAGGGTGGCCGTCTCCGACTC 27722 30 96.7 31 .............................C TCTACCCGTCGTTCAAGGCGGCGATCGACGG 27661 30 100.0 31 .............................. TCGAGAACACGGCCTTGACCAGGCCCTTGGC 27600 30 100.0 31 .............................. TCGAGAACACGGCCTTGACCAGGCCCTTGGC 27539 30 96.7 31 .............................A GATCGCCCCTGCCGGCTGGCCGCCCCGCCAC 27478 30 96.7 31 .............................A GCACGCCGCAGGAACTACTCACCCGCGGCAT 27417 30 96.7 31 .............................A ACGGCGCCGACCTCACGGAGATCGCCGAGGC 27356 30 93.3 31 ............................GA ACGCGCTCGGCTTCATGAACGTCACCGGCCT 27295 30 96.7 31 .............................T TTTCGCCGAGGAGAAAGAGCCCGCCGAGCTC 27234 30 100.0 31 .............................. CAGACTCACTGATCGGCGTCTCTGTGGAGCT 27173 30 96.7 31 .............................A ACCAACTCACGCATTTCCAGGTACATATCCC 27112 30 96.7 31 .............................A ACTCTTCAACAGTCATGCCTAACGACAGAGC 27051 30 96.7 31 .............................A CCTGCGGCAGCACCGCCAGGCCGCCCGCGTC 26990 30 96.7 31 .............................C TCCAGCGGCGGAGCCTCAAGCCCATACGCGG 26929 30 96.7 31 .............................C TCCAGCGGCGGAGCCTCAAGCCCATACGCGG 26868 30 96.7 31 .............................T GGCCAGGAAGGACGGGGACGCTGACGGAGGT 26807 30 100.0 31 .............................. GGTTCGTCGTCCCGTAGTCCATCGCGACGCA 26746 30 93.3 31 ............................AC GGTCTCGCTCGAAGATCTCCAGTGGAGTGAA 26685 30 100.0 31 .............................. CTGATCAGGCCTGCGGTCGTCTCGGGCTCGC 26624 30 100.0 31 .............................. CCGACGGACGGTAGTGGATCAGCGCGACGCG 26563 30 96.7 32 .............................T TCCTTCTCGACCGTCTTGGTAACGGTCTCAAT 26501 30 96.7 31 .............................A TGAACGAGCTGCCGTACGCCCCGGCGTCCAG 26440 30 93.3 31 .....................G.......C GCCCGATCGGAGGAAAACCCGGATGACCACC 26379 30 96.7 31 .............................T GGTCGGCCGTCCAGGACTTGGCGCCCAGATG 26318 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 36 30 97.4 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCCCACCAAAGTGACCCACCCCGCACGTCGCACACAGTGCCGCACTTTCGCTAGGCTTACGTAGGTCCGCCTCCGTAGCTCAGGGGATAGAGCACCGCTCTCCTAAAGCGGGTGCCGCAGGTTCGAATCCTGCCGGGGGCACCATGTTCGAGCAGCAGCGAAGCGCCCTTGACCAGCGGAAACGTCGGCCAAGGGCTTTTTGATGTGTCCGGTGGTGTACGGCTGCAGCTGATCGTCGGCGGGCGATCGTGCCAAATACGTGCGCACGCCCAGCGGCATGCAAGACTCAATGCCGAACCCTCCAACCAGAGGTGACTCCTTGCTATCTCAATCCACAGCTCCGGGAGTCCGTAATGTCCGATTCCGCGAAAGTGCTCAAAAACCGCCTCGGCAGCCGGTAACGGCGCAGGTCAGCCAG # Right flank : CCTCCTGAGCGGTCTTGTATTCGTGCGCCGAGTGCTCGGTTGCGTCCACGGGAGTGGTGTACGAGTTAGGCCTGGTCACAGGCGTGGCGCCGTGAAATGGTGACGGCCATCGCGTGATCCTTCGAAGGCGAAAGTCAAGATCGAAGGAGAACACGTGATGGCCGCGGACAACAGTGTGACGCCCGAGCAGTGGCTGGCGAAGCAGATCGAGACCCAGGACCCCGACTTGTTGCGATCCATGGTGAAGACCATGGCCGAGGCGTTGATGTCGGCCGAAGCCGACAGCCTGTGCGGCGCCGGCTACGGCCGGCGCAGCGACGAGCGGACCAACCGGCGCAACGGCTACCGTCCCCGCGAGTGGGACACGCGCGCGGGCTCGATCGAGCTGGCCATCCCGAAGCTGCGCTCAGGCTCGTACTTCCCGGACTGGCTGCTGGAGCGCACGCGACGGGCCGAGCAGGCGCTGATCAGCGTCGTGGCCACCAGCTACCTGCTGGGCG # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //