Array 1 3786-2578 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBFG01000316.1 Verrucomicrobium spinosum DSM 4136 = JCM 18804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3785 36 100.0 40 .................................... AGAGCGGCTCCCTGGTGGTTCCGGGAATCAACATGAAGGA 3709 36 100.0 37 .................................... GGTTTTCCTGGACGGCTCCCCCGGAGTTGCAGGCGGA 3636 36 100.0 38 .................................... ACAGAACCCACGGACCGACTCCCCATCCATATCACTGG 3562 36 100.0 37 .................................... TCGGCCTGCTCTGGGGTCATCTTGAGGGCAGTCAGCA 3489 36 100.0 37 .................................... TCAGCGCGAGACTGCAATGCACCCGACTTGTCCAGCT 3416 36 100.0 37 .................................... AGCGCTGGCGGCTGGGAGTGGAAAGGCGAGTTCGTCG 3343 36 100.0 38 .................................... CATGCCGACCAGGGCGAGGCGCAGACCGTGGCCGTCGT 3269 36 100.0 38 .................................... CAGACACCGCCTCATCCGGCCCCGTAGCCTCCAGATCC 3195 36 100.0 37 .................................... TTGATGTTGGAGGTCCGCAGACGGATGCCCCTTACCC 3122 36 100.0 37 .................................... GGATTGAGGAGCTGGCTGTTTACCAGGCTGTCTACGG 3049 36 100.0 36 .................................... CAGGCCAGTGGCGATGTCCGCAGGTGTGGCGTCGTC 2977 36 100.0 38 .................................... GTTTTGCAGTGACCGGATCTCAAAGGACTTAATCGTGC 2903 36 100.0 38 .................................... CTCCGCGATGGTGAGTCGTTTGGGGCCGCACCCGTCAA 2829 36 100.0 38 .................................... CTCGCAGAAGCAGTCGAAAAAAAGTTATCTCATAGACC 2755 36 100.0 35 .................................... GTACGGAAGGAGATCACGTCTCCTTCTTGAAGATA 2684 36 100.0 35 .................................... CGCCTGGAGGTGGCGATGACCAAGCCGGACAACAT 2613 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 17 36 100.0 37 CCAGCAGCAGTCAGTAAGCCGAAAGGCAATGGCGAC # Left flank : GAACGAAGCGGGCCAGTACCGGACGACGTCGCACA # Right flank : AACACGACACTCGACACATTGCCAGAGCGGTTGGCATCACCAGCAGCAGTCAATAAGCGAGCCTCCCTGAATGACCCGGGCCTACAGCCCTCAATATCTAGAACCAACGCCAACCTTGGGCGTTGGCCATGGCGGCCATCACGCCGGGCTTTCAGCCCCCCAGCTCGTTTGACGAAGCGAGGTCATCAGCCTCGCCAGCTTTTACCTGATGGAATGGGGATTTAGCCCGCCGGAATGACATTGGCAGAACCACGCCTTTTCCGAAGGATGTGCAGACGGAGGGCAGCATGCACTGCCACTCCGTTCCCTACCCACCAAGGACGCCCGACAACTCTACTCCGCGTAGTTCGCCTTCTTGGAGAGGAAGTACTCTAGGCTGTCCACCAACGCTTCCCAGCTGGCGTCGATGATGTTGGTGCTCACGCCGACGGTGCCCCAGTGGTTCACACCATCGGTGCTCTCGATCAGCACGCGGGTCTTGGCAGCGGTGCCCGTGCGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCAGCAGTCAGTAAGCCGAAAGGCAATGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 2801-4822 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBFG01000286.1 Verrucomicrobium spinosum DSM 4136 = JCM 18804, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2801 36 100.0 40 .................................... TCTGCGGCATCCGCAACGGAGGTAGGCAGCACCTGAAGCT 2877 36 100.0 38 .................................... CACCCTCGACGCATACCCACGCTCAGGGCGAAATCACG 2951 36 100.0 37 .................................... AATGGGTGCGGAGATGTTGGAGACGTTCGTGAGTTTT 3024 36 100.0 35 .................................... CGAGGTTAGGAACCGGACATACCTTGCCATTATCA 3095 36 100.0 38 .................................... GCGCCATGGAGCTAAGGGCAAAAGTCGATCCGGCGCTG 3169 36 100.0 38 .................................... ACGGCTTGTTATTTCCTTCTCCCCCAGCGCCGCGGCAT 3243 36 100.0 36 .................................... TGGGCGCTGTGTGTGGAGTGAGGGGATGATCCTCGA 3315 36 100.0 37 .................................... CTGCACCTAGGGCCCACCAGTGGGGCGCAGGTGGGAG 3388 36 100.0 37 .................................... TGACGGTAGCCATAGAAGGGAAGGAAAGTTATGGGTT 3461 36 100.0 38 .................................... TGCTCCATGGCAAGTTGAGCATTGTCAACTTGTTCCGT 3535 36 100.0 34 .................................... GTTGCCGTGTGCAAGGTCAAGCGCCAGGCACCCG 3605 36 100.0 38 .................................... ATTCCGTTCACGGGCACCGCTTGACCGGCGCGTTGCCT 3679 36 100.0 40 .................................... GTTGTGACATCTCCGAAGTTCAGGGAGAGTGCTCGTGCTC 3755 36 100.0 40 .................................... TCCACTTTCACGGGCTTGGCAGGTTTGGCCGGGGGAGCCG 3831 36 100.0 38 .................................... GCAATGGCGAGCGCTGCCTCTTTAGCGTCCTTTAGGTC 3905 36 100.0 40 .................................... GCGGTTGATCGCGGCCCCGGATACCTGACGCTCCAGCAAG 3981 36 100.0 37 .................................... GCTCCTTAGTCGGACCTTCTGCAACTGCTGGAGCTGA 4054 36 100.0 36 .................................... CAAAGAGCAGCTCACAGACGAGTACACGGAAGAGGA 4126 36 100.0 38 .................................... CTGCTCTGGCAGGGTCGGAAAATACAAGTCCACATATC 4200 36 100.0 37 .................................... TTGACACAGAAACCACGACCGCCAGCTAACGGCAAGG 4273 36 100.0 37 .................................... GATTATGACCGCGGCATTGTGACCGTTCACAAAATCG 4346 36 100.0 39 .................................... ATGATTCCGTTGGGGCGGGATTTTGGGACGAAAACGGTT 4421 36 100.0 39 .................................... CTGGAACCATCAGACGGGGCCAAGGATCGGTTCACCAAC 4496 36 100.0 37 .................................... TTGTCCACTCTGAGCGACAGCGTTAACAAGATCTATC 4569 36 100.0 38 .................................... TGTTCAAAGCAGTTTGCGGTATAGTAATCAATATGGGA 4643 36 100.0 36 .................................... TTGAGAATAGGAGATGCAATGGAAAAACCCTTATTG 4715 36 100.0 35 .................................... ACGGGAAAAGTCGGATTTCTTGAGCACACACACGG 4786 36 100.0 0 .................................... | T [4820] ========== ====== ====== ====== ==================================== ======================================== ================== 28 36 100.0 38 GTCTCCGCACTCGAAAGGGTGCGGCTTCGTTGAAGC # Left flank : AAGCGGTTGAGAAAGGTGTTTAAGGTCTGCAAAAACCATGGTACTCATTTGCAGTACTCGGTGTTCGAGTGTGATCTGAACCCGAGAGAGAGAACCCGGCTGGAGCGCGAACTGAGGGATGTGATCAAACACGATGAGGACCAGGTTTTGTTTGTCTCTCTGGGCCCCAGTGAGGGCCGGGGAGACCGTGTCATTGCGTCCGTGGGGCTGCCCTACGCACGCTTTGACGCCCCCTGCTATGTGGTGTGAAGCACCGCAGGGGAAAGGGGAACAGGGAAGGAGGCGATCTTTGACATTCACCAAAACATTCAGAGCAGGAGCGCCCGCGCTGACTCGCGAGCGGTCAGGTGCTGCGCGCCAACCGGGAGGCGCTCGCGCGTTGTGGATGAGGGGTTTGCAGCAGAAAAGCGGCGAGGGTTCGCCGATTCCCGGTTTGATTCAGGGTGCCGCTCGCAGATGAGCTTCTTGCAATTTGATGCTGAATGGCCTACAGAGGTGGC # Right flank : GAGTGAGGCAAGCGGTGCGCTTGCCCTACAGCGTCAATAACCGATTAAAATCGGAACAGTGATCCAGGGAAGTTGAGATGCCGGAGGCGACGTCGCTGGCATCCGCTCCGGGATGCAATACTGAATCTGATGTTCCGGAGGTATCAGTCGCTACGCTCCTTCAACCGTCCGTCTAATGGCTTTGATGCCTCCGGCATCGGGCAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCACTCGAAAGGGTGCGGCTTCGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2894-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBFG01000069.1 Verrucomicrobium spinosum DSM 4136 = JCM 18804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2893 36 100.0 37 .................................... AATAGCTTCGTGCCAGTCGATCTTGCCGCCGGGTATG 2820 36 100.0 37 .................................... GAAACTCAAGCCGCCATAGTAGCCCTCTCCCATCAGG 2747 36 100.0 38 .................................... TCGAGCTCCTCGGGGTAATCGAGGGTCGTCTTCATGAT 2673 36 100.0 38 .................................... TCGCGCTCAGCCAGGTGGGTCAAGTATTCCGCCTGAGC 2599 36 100.0 38 .................................... GATGCGGTCGATCACCGTGCCATATGGAGTGCCCATGT 2525 36 100.0 39 .................................... TCAGGCACTGGGCGAAATTCGTGAACGTGGCGCTTGCGG 2450 36 100.0 38 .................................... GAGTGTGCCGTGCAAAACTTACTGCTCACTGGCGCGGA 2376 36 100.0 40 .................................... TCTTCCCGACCGACGGCCTCGCCGCCACGATCACCAGGTC 2300 36 100.0 39 .................................... TTGGCCTTGTGGCTCGACCGCTTTGCGTGGCCAAGGTTG 2225 36 100.0 36 .................................... GCGGGTGGTGACTCCATGCCAAGAGTTGCCAGAAAT 2153 36 100.0 37 .................................... ACTTCCCTGGTAGTAGGGATCGGTGATCTTGACCTTC 2080 36 100.0 37 .................................... GCTGGGGCTGCTCACAAGTTGGGCCTGACCAAGGCGC 2007 36 100.0 37 .................................... CGTGCGGTCGGTACTCGCCGCCTAGGTAAAGGCCAAG 1934 36 100.0 36 .................................... GCGACCCGCGTCGATGGTGACTTTCGAAGGACCTTG 1862 36 100.0 37 .................................... GCTGTGCGTGGCGGGGAACGTGTTTTGGAGAATGCCT 1789 36 100.0 37 .................................... ACCGACGATGAGGTGATGTCCTATCTGCCGAGCGCCT 1716 36 100.0 37 .................................... ACGCCCGGGGCAAGAGGTGGCGTCGTGAATCGATATC 1643 36 100.0 37 .................................... CCGCCTTCGCCGGTCAAGTCCTTGAAGGCTTGCTCCA 1570 36 100.0 35 .................................... GCGGCGGCGACCAAGGCGACGGCGTCGCGAGGATC 1499 36 100.0 37 .................................... CGTCTCCACGGAGTGGGTTCAAGGAAAGTTCAAGGAG 1426 36 100.0 38 .................................... TTTAGGATGCGGCATCCGGCCTGGTATTTCTCCATGCC 1352 36 100.0 38 .................................... CGCCCGTCGGGGCTGTGTTCACGCTGGCCCTCACGGCA 1278 36 100.0 40 .................................... AATGCGATCTCAACATCATACACCGCGTTGAGGTCGGCGG 1202 36 100.0 38 .................................... AGGTCGGTGGTGAAGTCTGACGACCACCGTCTCATTGA 1128 36 100.0 37 .................................... CTCAAATGGAACAAGGCTGGCGGGAAGGTTCTCGCTG 1055 36 100.0 35 .................................... GGCTTGCCCGCGTATCGACCTCCGCCGTCTCGATC 984 36 100.0 39 .................................... AGAGATCATTTCGTGCTGCCAAACCCGCCATTCGGGTGT 909 36 100.0 37 .................................... GGCCCGACGCTTGGCAAAGGCGATATCGACGAAGATC 836 36 100.0 38 .................................... GCGGTTCAACCAGGGCGGTATCAAGGCGGAGGCTCATT 762 36 100.0 36 .................................... ACGAAGCTGAGGTCGATGAACTTGCCGCCCCACTCG 690 36 100.0 36 .................................... CAGAGGCACGATGTTGTTGGGGGCATAGTACATATC 618 36 100.0 36 .................................... GCAAACTTTGCAAATTTTGTCACTGCCACCCGATCA 546 36 100.0 37 .................................... GACTGTATTTAGTGGCTTCTTGCGTATTACCCTTCCA 473 36 100.0 36 .................................... GATGCGATGGCGATCCATGACCTGCTGGTGAACCAC 401 36 100.0 37 .................................... AAGTTCAGGGCTAAGCGCAAAGAACCCTCCGCCCGTT 328 36 100.0 36 .................................... TCCGGTGCCGGCACCTGCCATGGCCCCTTCGAGTGA 256 36 100.0 38 .................................... CATGGCAGGGGTTCGGTGTGTTTCAGGTCGTGTTCAGT 182 36 100.0 35 .................................... GTTCCCAAGGAAGTAGGTTTTGTTTTTGATGAGCG 111 36 100.0 37 .................................... AGCGTCAAGGTCCGCAGCGAACCAGCCAACGGTTCTT 38 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 40 36 100.0 37 CCAGCAGCAGTCAGTAAGCCGAAAGGCAATGGCGAC # Left flank : CATCCATCGTGACACCGTTCGTGACGTTCCGCCCCGGGTGGGGTGAGGCTTCCATGGAGATCCTGGGACATCCTCACGTTCGCCGCTCGGCCTCCCACGAGGAGAATGTCTCATGTCCCGTCGCGTCCGACACATTCATGCCCGCCGTGGAGAACACGTCGTCGTCCATCGCCCCCACAGCAGCGGAGGCGGTGGCGACGCCGGATGCGGGATCGCCATCCTGCTCGTCATCGCCTTCTTCCTCCTGCGGAGTTGCGGCTGATGGCAGCGAGGGGGTGGAGGTGGAGGGGGCCGCCCCCCCCTGCCCAGGCAAACCCCTGCGATCTGCCGACATCTGCGAGCGCTCACGTGCCGCCCAAAGTGCCGGGGGCGCTCGCGTGCTGAGACTGTGGGAGTTAGCCCAAATCAAGCGCTCCCGCAGTGTCTCTCCACATGGAGTTTGCCTCCCCTCTCGCAAACTGCTACCGGAACCATTGACACTCAAGCTCCTAGCGTTACCT # Right flank : CGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCAGCAGTCAGTAAGCCGAAAGGCAATGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //