Array 1 9894-14073 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKOS01000088.1 Aeromonas caviae strain GEO_48_Eff_A NODE_88_length_17317_cov_21.3748, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9894 29 100.0 32 ............................. CAACGGCAGGGCAGCTTGATCCTTTCTACGGT 9955 29 100.0 32 ............................. TTAACCAATTTCTGTATGTACGACTCAGAAAC 10016 29 100.0 32 ............................. GTGCTGACCAGTCGAGGATGGACCCCCGGCAC 10077 29 100.0 32 ............................. TTCAACCCGGCAACCGGTTTGTGCTCGCTGGT 10138 29 100.0 32 ............................. TTCACTCGGCGAGAAAGGAACATCCCATGTTT 10199 29 100.0 32 ............................. GAGGTGAAAACCGGCGGCGACTTCAAGGAGAT 10260 29 100.0 32 ............................. GAGATGTAATAGCCCAGTGCAACTTGGGGGTT 10321 29 100.0 32 ............................. GCCTCGTCGATGCTGTATACCTCCACAGCTGG 10382 29 100.0 32 ............................. CCCGCCAGAAGGTTTACACCTCCATCGAGCTG 10443 29 100.0 32 ............................. CGTCATTTTATGTTGCCTCACTGAATGCGTTC 10504 29 100.0 32 ............................. TTGGCGACCTTGTGCGCTTCCCCGGACTGGCG 10565 29 100.0 32 ............................. GTCGGCCTCGTAGGCTTCCCTGGTCTTCAGCA 10626 29 100.0 32 ............................. GCGACCGACTCCTGCATCTTGGTTTCCAGTGT 10687 29 100.0 32 ............................. CGTCATTTTATGTTGCCTCACTGAATGCGTTC 10748 29 100.0 32 ............................. TTGGCGACCTTGTGCGCTTCCCCGGACTGGCG 10809 29 100.0 32 ............................. GTCGGCCTCGTAGGCTTCCCTGGTCTTCAGCA 10870 29 100.0 33 ............................. GCGGACACGGCCACCAACCAACTTGGTGGTGGC 10932 29 100.0 33 ............................. TACCGAGTGATCTACGCGGACCCAGCCTGGCAA 10994 29 100.0 32 ............................. CCGTAGTTCGCCAGCCGCTTCAGCTTGTTGAC 11055 29 100.0 32 ............................. TCCCACGGGTAAACGCATCGGGCCGCTGGGCG 11116 29 100.0 32 ............................. GATCTGGCTTCCTCCGAACCGGAGAAGGCCCG 11177 29 100.0 32 ............................. CCTGGTGCGAGCTGGATCCCCGCCGATGTGAT 11238 29 100.0 32 ............................. ATCCTGACCTGGGGCGTTATCTCCGGTGGCAC 11299 29 100.0 32 ............................. CACGTTCTCTCCGCCGCCCTGTACCAGCAGGA 11360 29 100.0 32 ............................. CGTTGGCGCGGGCCTGGTCGAATTGGGGATTG 11421 29 100.0 32 ............................. ACCTGGTTCTGGCAAGACATCTACAGCCGCAA 11482 29 100.0 32 ............................. ATCACCAAGATCCTGGCACCGTCCGTCAACGT 11543 29 100.0 32 ............................. GTTGAACGGCAGGGCCGGGTCGATGCTCTGGT 11604 29 100.0 32 ............................. TCCGTGGGCTGCGTGATGTTCATGCTCGACAT 11665 29 100.0 32 ............................. GCGCTCAGGGTGCTGGTTGCTGCACTGGATGA 11726 29 100.0 32 ............................. GTGATGCACATTTCTGCATTACTGCCGACCAC 11787 29 100.0 32 ............................. GCAAGCTCGGTGGCGATGGTCAATGGCGCCAG 11848 29 100.0 32 ............................. ATTCGCTAAATGGCACTTGAGCCGCCAGCCTT 11909 29 100.0 32 ............................. ATCTGTACACACTCTTTTCCGAATACCCGCTG 11970 29 100.0 32 ............................. CCTTTCTCCCAGAGCACTTCGAAGCAGGTTGT 12031 29 100.0 32 ............................. GACATTGAGCAGATCCGCAATGAGCTACACCT 12092 29 96.6 32 ............................A GGTTCTGTCCGTGGTCGCTAACGGTATCATCG 12153 29 100.0 32 ............................. CCCTGGGAGATGGCGTCAAATTCCGCCTCCAT 12214 29 100.0 32 ............................. TCCTGGATCTGGTAGCCCGCTTGCTGGGCCTT 12275 29 100.0 32 ............................. GTCGCTTGGCCCAGCCATTCTGCACAATCAGC 12336 29 100.0 32 ............................. CGCCCGGTATCAACAGGGCTGGCCTTGATAAC 12397 29 100.0 32 ............................. GTGATATGCTCGCCAGTCGTCTGCTGGTACGC 12458 29 100.0 32 ............................. GGCGCCACTGCCTCCGTAGTGCTGGCTACAGT 12519 29 100.0 32 ............................. CCCGTTGCCGAACTGCGCCAACAGGCCGAGCT 12580 29 100.0 32 ............................. ATTGCCCAGACCTTCCTCGGGGTGACACTGAC 12641 29 100.0 32 ............................. CTGGATCTGGTCAGCGGCGTCAGCCGCATTCA 12702 29 100.0 32 ............................. CAGATGAAAGACGGGCAGGGGCGTCCGCTCTG 12763 29 100.0 32 ............................. GCGACATGCTGCGCTGACCCTGCCTGTGCATC 12824 29 100.0 32 ............................. TCGGCAGGCGTGACCAGCGGCTGGCCGCCCCA 12885 29 100.0 32 ............................. CGCGGAGCATCCAGCTTCTATGGCCCGCGTGT 12946 29 100.0 32 ............................. AGCTGGCCCGAATGGGGCTTGAAGAGAGCAAC 13007 29 100.0 32 ............................. GTGGCGAACCGTAACAGGGGGCCGAAGAAGGC 13068 29 100.0 32 ............................. ACTGGATTCGCCGCCATTTCGAGGCATGGCTG 13129 29 100.0 32 ............................. CACCCGAAGGCTAAGCAAGTGGTGGCGAAGGC 13190 29 100.0 32 ............................. TGGAGAGCTCAGGCAGCTCATCGCTTACCAGG 13251 29 100.0 32 ............................. TTGGTCTGGGTGCATTCGTAGTTCTGGTCGTA 13312 29 100.0 33 ............................. TCTGCCTTGCTGCGGGTGATATCGTTCTCTGGC 13374 29 100.0 32 ............................. CGTGGTCAGGTCGGCGGCAGAGGTGTCTGGTG 13435 29 96.6 32 ............................T GACGGCGGTTACGATGATTGGATCCGGATAAT 13496 29 100.0 32 ............................. GCTACTACCTGCAGATCCTGCCGGCTACCGCC 13557 29 96.6 32 ............C................ GTGGTATTGCAGTTGTGACGTGGGGCGGCCCG 13618 29 96.6 32 ............C................ AGATGGCTAACACCCTGACCGGACTTATCCCG 13679 29 96.6 32 ............C................ ACGTATTCGCCAAGGTTAGCGTCCCAGACCTT 13740 29 96.6 32 ............C................ TGATCACGACCTACACATCCCGTGACGCCGAG 13801 29 96.6 32 ............C................ TTCATTGTTCGGGCCAGAGAGCTGGTCGAGCT 13862 29 93.1 32 ............C...............C AGACAAGGCGGCATCGATGCGATAAAGAAGCC 13923 29 96.6 32 ............C................ CCTGCTGTCGTGGCGGGTGAAGTCGCCGCCGC 13984 29 86.2 32 ........T...CT.............T. TGGAACCAGACGTTCAGGTCCAGCATCAAGGT 14045 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 69 29 99.3 32 CTGTTCCCCGCGTCCGCGGGGATGAACCG # Left flank : CCGCTTATCGAGGAGGTGCTCTCGGCCGGGGGCATCACCCCGCCAGACGCCCCTGCAGATGCCCAGCCGCCCGCCATCCCCGAACCCGTCGGCATGGGGGATGCCGGTCACAGGAGTCAGTGATGAGCATGCTGGTGGTGATCACCGAGGATGTGCCGCCGCGCCTGCGCGGCCGGCTCGCGGTCTGGTTACTCGAGGTGCGTGCCGGTGTCTATGTGGGAGAGGTGTCGCGCCGGGTGCGAGAGATGATCTGGCAGCAGTGCGAGGCTTTGGTGGAGCAGGGCAATATCGTGATGGCCTGGCCCGCTAATAACGATTCTGGTTTTGACTTTCAAACCCTGGGGACCAATCGCAGGGTGCCGGTGGACCTCGATGGTTGCCGATTGGTCTCTTTTCTACCCATTGAAAATCAATAGCTTAGCGTTCATTAACAATCTGGACTAGTCGGTGGCTTTTTCATGGTTGGAAAAAGCCATAAAAATCAATAGCATATGTTAAGT # Right flank : GAATCTCTTCGGCATGGCATGCTCTCGATTACGTGCTAGGGTAATCGTTCTGGCTGTCATTGTTTGATCAGCAGCGAGAGCTGATAGCGGACATTTTCTAACAGAGCAGCTTTAATTTGGCGCGTCGGGTTTCGATTTTGGGTGTTATCTGATCGCGTGTGTAATCACCCGTAACGAGACAAGTGAATTTTTTGACGAGCATTGAGCGGCGGATTTACACGCCTGCGGCTTTCCCACTCAAATCACCATGATCATTACCAACCCTAGACAGGACGTGGCTTTGCTAGTCGCCAGCCTTCTAGGGATAGGTGATCAGGTAAGGCTGATCTGATCAGATAAAGTGATCAGATCAGGCAACGCTGATCTGATTCCCCGATCACTTCCGGTGATCACTTCTCAGATTTTTTCCAGATACCAACCCCATGGCTCGTTTTGAAAACCTGCTTGGCATGAGATGAACTGCCAGCCAAGGTGGTACAGGTCATTATTCAAACGCCAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGTCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //