Array 1 812098-813852 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017666.1 Streptococcus suis strain 0061 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 812098 36 100.0 30 .................................... GCTAGAAAATATCAAACGAGAAAAACAGTT 812164 36 100.0 30 .................................... TTCAGTTAAAGACCAGGGCAAAGGGCTGCA 812230 36 100.0 30 .................................... TTGATGTAACGTATGCAGAACCATCACATT 812296 36 100.0 32 .................................... CTGTCGTTTGTCCACAAACAACAATAGACCCA 812364 36 100.0 31 .................................... ATTGGAAGGCAAGGCTTATAAACTTGCAGCA 812431 36 100.0 30 .................................... AGTGCTTGATGTAAGCAAGTAATTGTGCCT 812497 36 100.0 30 .................................... TCAGCGCTGGAAGATAAGGAAGAAGAATGC 812563 36 100.0 30 .................................... CCGAAGAAAAGAATTTCAGAAGTGCGCAGA 812629 36 100.0 30 .................................... TAACGATAATGGCGACACATTAACAGAAGA 812695 36 100.0 30 .................................... TTTAAGATAAATATAGTGAAGTTCTTTGTA 812761 36 100.0 30 .................................... ACGACCCGCTCCCTTGTGCTTCTCCGTACC 812827 36 100.0 30 .................................... ATAGCCGAACCTTCTAACGACAAATGCGTC 812893 36 100.0 30 .................................... GTTACATAGCCATATTCATGTCGTTTTGCA 812959 36 100.0 30 .................................... AGTTTCCGACGGTTGACCGTTTTGTGAGTT 813025 36 100.0 31 .................................... TTTCCCACTTTGCAACAGTTGGCTGTTCTTG 813092 36 100.0 30 .................................... TGAGATAGTAAGAATTTTGCTTGTCTCACA 813158 36 100.0 30 .................................... CTATGATGCCTGTACTTAATTCTTTCGCCA 813224 36 100.0 30 .................................... GCGTCGGGGCTTTTGCCTTTTGCTGTGCTT 813290 36 100.0 30 .................................... TCATTTTTTCTCATTCCAGTGAAGGCTAGC 813356 36 100.0 29 .................................... TCTTGAAAGCTAAGCTAACTCCAGCAGGA 813421 36 100.0 30 .................................... ATTCTGTTATCTGGTTAGATAGTGCTAAAT 813487 36 100.0 30 .................................... AACGGCTTTATATCAGAAAATGAATAAAGA 813553 36 100.0 30 .................................... TAAGGAGACTTTGGCTGGGGTACATGGTAA 813619 36 100.0 30 .................................... AAGAGCCTCACCCCCTTTCCTTGTATGATA 813685 36 100.0 30 .................................... TATGTGGGTATATTACCTGGCTTCTACGAT 813751 36 100.0 30 .................................... TCCTCAGAAAGGGAAAACAGAACTTATCCA 813817 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 27 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAAAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGTGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGGTTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CCGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGCCCCACCCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGACTGGGGACTGGCTCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //