Array 1 650065-648863 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDO01000001.1 Riemerella anatipestifer strain RCAD0134 ZB100000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 650064 47 100.0 30 ............................................... GATGGTTTTAGAGTTTCTTTATTCTATTTC 649987 47 100.0 30 ............................................... ATCCAAAACGATTTACAGCAGATTGCGAGT 649910 47 100.0 30 ............................................... GCGATTCCGGTTCAGGCCAGCACCTGGAGA 649833 47 100.0 30 ............................................... TAGTATTGGGATGTGTTATTTAAAAAGTGT 649756 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 649679 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 649602 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 649525 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 649448 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 649371 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 649294 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 649217 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 649140 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 649063 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 648986 47 97.9 30 ........................G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 648909 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 97.9 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 14275-12210 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDO01000012.1 Riemerella anatipestifer strain RCAD0134 ZB100011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 14274 36 97.2 30 ................T................... TAAAAAATAGAATAAGAAATATTCCTATCA 14208 36 97.2 30 ................G................... CATTTCAGAGTTGCAGATTAAATTGGTTGA 14142 36 94.4 30 .......T........G................... TTTAGCTTCATTCTCTGTACCTTTTAGAAT 14076 36 97.2 30 ................T................... AAAGGCTTATCGCCTCTATATTTTCAAAAT 14010 36 97.2 30 ................T................... CTGTTGTTGTAAATATAATAGGTCCTATTG 13944 36 97.2 30 ................T................... CCTTTTCCTCATCACCTTCGTAGATGCAGA 13878 36 97.2 30 ................T................... TTCATTTATACTTCTAGGTAACTTAGTTAA 13812 36 100.0 30 .................................... AAAGGAACGCTACTCGTTGTAGGAAGCACA 13746 36 100.0 30 .................................... GGAGCCACCAAGATATCCCAAGGGTTCGTC 13680 36 100.0 30 .................................... TAAGATTTCTGGATTTTCGTATATGTTGCT 13614 36 100.0 30 .................................... TGCTTTGTTCTTCTCCTTCTTTTGTTGCCG 13548 36 100.0 30 .................................... AGCCACAGCGTTTGATGGTTCTACTGCTAT 13482 36 100.0 80 .................................... AGATCATGAAAACATTCAATTCTACCTTCCGTTGGGACTGCTCTCATTTTAGCTCACAGCTTTGTTGTAGTTTCAGCGGA 13366 35 86.1 80 ...C...A....AG..-................... GAGTTAAACAATGGCGTATTATTCGTCCAAGTTGGGACTGCTCTCATTTTAGCTCACAGCTTCGTTGTATTTTCAGCGGA A,T [13355,13362] 13249 35 83.3 81 ...C...A...G-.A.............C....... TTTTTTCACGAGTATCTGCTAAGTCTGATTGTTGGGACTGCTCTCAGTTTAGCTCACAACTTTGTTGTCGTTTTCAGCAGA A,T [13232,13245] 13131 35 86.1 81 ...C...A...A-.A..................... TTTATTTTGGTATTTTAAGTTGTTGTGAGTGTTGGGACTGCTCTCAGTTTAGCTCACAAGCTTTGTTGTTGTTTCAGCGGA A,T [13114,13127] 13013 35 83.3 82 ...C...A....AG..-.............A..... ATATTAAGGCTACAGCACAAAACACAGAAAGTTGGGACTGCTCTCAGTTTAGCTCACAGCTTTGTTGTAAGTTTTCAGCGGA G,T [13002,13009] 12894 35 83.3 79 ...C...A...G-.A.............C....... CCGTTTAGTTTACCGTCATCTGCTAGGTCTGTTGGGACTACTCTCATTTTACTCACAGCTTCGTTATATTTTCAGCGGA A,T [12877,12890] 12778 35 86.1 79 ...C...A.A..-.A..................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGA A,G,T [12760,12762,12774] 12661 35 83.3 79 ...C...A...G-.A.............C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGA A,T [12644,12657] 12545 35 86.1 79 ...C...A.A..-.A..................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGA A,G,T [12527,12529,12541] 12428 35 83.3 80 ...C...A...G-.A.............C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGAG A,T [12411,12424] 12311 35 83.3 30 T...T..A....AG..-................... AATTTCTCATATCGTTATTATTTTACTAGT A [12301] 12245 36 88.9 0 ...........CA...T.C................. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 24 36 92.1 52 GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Left flank : TACCGTCTGCTGGCGTATATGACCGACCAAGACAACCCCAAAAACCTCTTAAAATGGGAAGTTCCCAAAGGGCAAAAGGATAAAATTCATTATATTAACCGAGCCAATGCCCAAGCCTTTCTAAGGGAGCTCCCAGAACTATTTTATGGGGAGGGCTGTGGGCTCTTCTTATCTGAGGAAGTCACCAAAAAGTTTTTTGAGTACCGTAGTATCGTTCATAAGCTCCTACTTGCAGAGCAAAACAGCACCGAGGCGGAGTTCCGACTAAAAAACGAAGAGGCGGCTACCAGAATGAAGGTGCTGCATCATAAGTTGAGCCAAAGCATTAGGCAATGCCTAAAAATAGAACAACGCGATTTAAAAGCGTTGTAAAGAAAAGCGTTCTTTGAAACATCGAGATAAAACAAGCACCCAAAAAAGACAATACCCTATCATAACAATAATGCACAGCATTTGAAGGGTATTCACAACACCAATAAATACAGCTTATTTGCTCCTAA # Right flank : ACCTAAGGGCATAAAAAAATCCCTGCTCTGTACGGTACAGAGCAGGGATTTTGCTTCCTATTTATTCTATTACAGAAAATACCTCACTTCCTTAGTACAGGCGAAGTCGGTTCCCTCGTACGAGGGAAGGCTCTTCTCCTTACCGAGAGAAGAGCCTTCGCCTTAGGCAGTGAAGTGTCTTCCTCTTATAAAGCGACCGCCCTTCCTTAGCATTAAGGAAGGGCGGTCTTTATTTAGAAGTGCCAAAAACACACTACACAATAGTAATAGGCGTGCTTAGTGTTTCGGTTCGGGGTTCTTTCAGTAAGGTAGTGCCTTTACTGCTTTGCGTGGTGATGCTGAGTTCATAGTTACCCGCTTCTAAATCTGTAGGAACGAGAATGAGTAACCTTGACGGCTCATTAAGGACAATATGCTCTGCTGAGAGTTTCACTTCTTGCTGAGTGTCTAAGTTTTTAAAGACAATACCGTTTTTAGGGTTGTCCCCATCTATTTTAATG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.45, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [59-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //