Array 1 26-1456 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDK01000008.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIC .SLX_12186.D708_D507.HJ72NBBXX.s_1.r.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26 29 100.0 32 ............................. CGAAAGTAGAACGGGCGGGAGAATATTTAATA 87 29 100.0 32 ............................. TTAAAACGTTTAAATCCATTAGAAAATAAATC 148 29 100.0 32 ............................. AGATGGCACAGAATCAGGTTTTTCAAGCGCCG 209 29 100.0 32 ............................. CTGATCCAACTTACCAAATTAGTGCTGGTAAT 270 29 100.0 32 ............................. GGTATCAACAAACTGTTATTTCATTCATTACG 331 29 100.0 32 ............................. GATTATTATCTGGTGTTGATATAAACGATAAT 392 29 100.0 32 ............................. TTAATATTAATGATTATCCTTCCGGAGTAACA 453 29 100.0 32 ............................. ACCGCCAACTAAGCCAGCGCCAAACCCACCAG 514 29 100.0 32 ............................. GACTTTGTAACCGATCCACATAATACACATAG 575 29 100.0 32 ............................. GCGTCTCCATGCCGTTGATAAACATCCCGCCC 636 29 100.0 32 ............................. ATCAGTTTCCCGACAGTATTGCCGTTCTGCTG 697 29 100.0 32 ............................. AAAAAATGGAGCGCCTGCAGTCGACGTTTACC 758 29 100.0 32 ............................. ATCCTGAATATGGAACATGTCGGATAACGTTT 819 29 100.0 32 ............................. GCGCCAACCATCAGGGTTTAACCAGGCGATGA 880 29 100.0 32 ............................. GCTTCGCTAAATGACACGGCTAACTCAGTAGC 941 29 96.6 32 ............................C TCACAAAACCGCTGCGCCAGCTTAATGCGGTC 1002 29 100.0 32 ............................. TCCGAAACCGCCGTCGCACTGGCTGACGGTGT 1063 29 100.0 32 ............................. CAGTGTTTCCCGATGCCTGAAACTTTCCATGA 1124 29 100.0 32 ............................. TTGCAGGGTGATATTGTTGTTGGTGAATGGGA 1185 29 100.0 32 ............................. CGTTTTCTCCGGAGAACCGCTACAAATACTAA 1246 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 1307 29 100.0 32 ............................. AGAACCATCTTTCTGCGATTTATACTCAACGA 1368 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 1429 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GACCCAGACGGAGGATGGAGTAGAGG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9897-11085 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDK01000008.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIC .SLX_12186.D708_D507.HJ72NBBXX.s_1.r.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9897 29 100.0 32 ............................. CGATTCGCGCTGGATCATCTCGTTCGCGCCGC 9958 29 100.0 32 ............................. CGCCCAGATACTGGCAGACCAAATTGCAGCAC 10019 29 100.0 32 ............................. ACGACGTCACTAACCGAATTTATAACCTTGGT 10080 29 100.0 32 ............................. GACGCATGGGAGCACGGTAAACCACTGGCGCA 10141 29 100.0 32 ............................. CAGCCGCCTGGCAGAATAAACACCGCGGAACA 10202 29 100.0 32 ............................. TCAACGAGACACGCAGCGCGCTGGACGGTTTC 10263 29 100.0 32 ............................. GGGATTTTGATTCCTGACGATGTTTTGTGCCG 10324 29 100.0 32 ............................. CTGAGCGTAATAGGGAGGAATATGCGCAAAGC 10385 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 10446 29 100.0 32 ............................. CGATGGAATTTAGGGGGATATCTCAGAATAAA 10507 29 96.6 32 ............................A CTTTGGTGCCTATTGGCAACCCCATTAAGTCC 10568 29 100.0 32 ............................. ACATAAACGGACGCGCGGGGATCCGAATTTTT 10629 29 100.0 32 ............................. TTCGCCGTCGTGAAAGCGGGTGAGCATTCCAG 10690 29 100.0 32 ............................. CTGGCCCCGCCCCGTGGTGTTTTTCGAAATTT 10751 29 96.6 32 .............T............... GCTGATAGCCAACCTGTAAGTGATCGTGATGA 10812 29 100.0 32 ............................. GTGCGAAAAATGGCAAAAGGATCGAACAAAAA 10873 29 100.0 32 ............................. TCGGCCTGTGCGGTTGCGGCCTGCCATTGCTC 10934 29 100.0 32 ............................. GAACAGATCACGCTCGGCGACGCGGCGGTTAT 10995 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11056 29 96.6 0 A............................ | A [11082] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGTAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGGGCCAGAATATGCAATATTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 73028-74641 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDK01000017.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIC .SLX_12186.D708_D507.HJ72NBBXX.s_1.r.17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73028 29 100.0 32 ............................. GCGGTGCTTCGCTGGTGGACGAGGCGCTAAAC 73089 29 100.0 32 ............................. AGGCTCAGGAGCGAGAGCAGTTAGCGAGCAGG 73150 29 100.0 32 ............................. CATACTGCGGAACACAGTTCCACCCATATTGG 73211 29 100.0 32 ............................. TTAAAAACACAAGTCTCATTATGGGAAAAAAT 73272 29 96.6 32 ............................C AATCGCGTTACGCTCAATGCAGGGAACCTGGA 73333 29 100.0 32 ............................. TAACTACTGAATTTCAAAACGCGGCTACTCTT 73394 29 100.0 32 ............................. GGTTGTCTGGTAATGCTGCATATTCACGCCTC 73455 29 100.0 32 ............................. AGCCGTTTATATTAATAATGTAACATGTAGAA 73516 29 100.0 32 ............................. GCTACGGTAATGCCATAAACGCACAGGCTGCT 73577 29 100.0 32 ............................. CAATACGACTGGACGGGATTTGATTCATTAAC 73638 29 100.0 32 ............................. GCCCACAAGGAAGGCGCTTACTTTGTTGCTAA 73699 29 100.0 32 ............................. AGATCTCTACGTCGGAGAATTCTGGCGAATCC 73760 29 100.0 32 ............................. GGCTATCGCAGCGTTCGTGACCTGATAGCGTC 73821 29 100.0 32 ............................. CCTTTAAGGGAGAATGCCCAATTTGCAAGCGT 73882 29 100.0 32 ............................. ATTTTAGCAGTTCCTCCGCAATATACATTGCC 73943 29 100.0 32 ............................. GCGTCAGCGTGGCGCGCGTTGAGGTATTGCGG 74004 29 100.0 32 ............................. TTGAACCGTCAACTGGAATTAATAATTTAATT 74065 29 100.0 32 ............................. CCGTTAATTTTGCTGATGGAAATGATAATGCA 74126 29 96.6 32 ............................T GGTCGGAGGCACGAGTGGAATAGGCGCGATAC 74187 29 100.0 32 ............................. ATGCGGCGGTAGTGTCATTTGTGCCAGTCTGA 74248 29 100.0 32 ............................. GGGTCTGGTCAGGGAACTACTGATACATATTC 74309 29 100.0 33 ............................. CCGGAAAACTTCCTGTCGAGCCGCACCTCATGC 74371 29 100.0 32 ............................. CTGCCGTCATTTAAAATAACCTGAATTGTATA 74432 29 100.0 32 ............................. AATTTTCCCTTTGCGTTAATACTCCATCGGAA 74493 29 96.6 32 ............................T AATTATTGACCCAGACGGAGGATGGAGTAGAG 74554 29 100.0 32 ............................. CGAAAGTAGAACGGGCGGGAGAATATTTAATA 74615 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //