Array 1 37493-38540 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTX01000004.1 Pseudomonas aeruginosa strain AZPAE14865 AZPAE14865_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37493 28 100.0 32 ............................ ATGGGGGTAACGCCGATCAGGTGAGCCAGGGC 37553 28 100.0 32 ............................ ACCACCGTCTGCTCAACCGAGCTGTCCAACCG 37613 28 100.0 32 ............................ AGCATGAGCGCGACCTGCGCGCGCAGATCCAG 37673 28 100.0 32 ............................ ATCAGGTCAGCGTCCCAGCGAATGGTGTCGAG 37733 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 37793 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 37853 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37913 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37973 28 100.0 32 ............................ AGAAACGCATCCAGCGATACGAAGATGCACTC 38033 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 38093 28 100.0 32 ............................ AGTCTTCGGCCTTTTCCCACCAGGCTTGCGCG 38153 28 100.0 32 ............................ TTCGCGCTGGCCAACGTCGCGGCATCACCATC 38213 28 100.0 32 ............................ TGCAGCGTGTGCAGGCAGTCGATGGCCGCCCT 38273 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 38333 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 38393 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 38453 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38513 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAAGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGATGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47923-47055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTX01000004.1 Pseudomonas aeruginosa strain AZPAE14865 AZPAE14865_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47922 28 100.0 32 ............................ ATGCCAGCCACAACGGCGAGGCGCCAAAAAGG 47862 28 100.0 32 ............................ TCTGACGGCATCGTACACAAGGCAGAGGCCAA 47802 28 100.0 32 ............................ AAACCGCCAAGCTGCTGAGGGCCAATGAGGCC 47742 28 100.0 32 ............................ TCACCCTCATGCTTGTAGGTGCCGCCGATCTC 47682 28 100.0 32 ............................ ATCCTCGAACAGCCCGGGTTCGGTCGCCTCCA 47622 28 100.0 32 ............................ AGGAGTTTGCGGCCCCGCTCCCTGCGGCTCTC 47562 28 100.0 32 ............................ TTCACGGCGGGCTTGATGTCCGCGTCTACCTG 47502 28 100.0 32 ............................ TTGCCGAGTACGATGCCTGATACATGAATCCA 47442 28 100.0 32 ............................ TATGCGCCAGGCCGCGTGCTTGTGTGCGGTGT 47382 28 100.0 32 ............................ TGGCTGTGGTGCCGGCAGTCCGGGGAGGCGTG 47322 28 100.0 32 ............................ AAGTGCTGGCACAGTACAGGGACAAGCGGTCC 47262 28 100.0 32 ............................ ATGGCGCACCCGAAGGAAACCCGCGACGCCCT 47202 28 100.0 32 ............................ TGGCCGCAGGCGAGCAGGTCAGCCGGGGCCAT 47142 28 100.0 32 ............................ CCCAGACTCTCAATCATCACGTCATTGCGCGC 47082 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 92513-91945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTX01000062.1 Pseudomonas aeruginosa strain AZPAE14865 AZPAE14865_contig_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 92512 28 100.0 32 ............................ ATCAGGACGTGCCAGATGACTCCACCGACTGA 92452 28 100.0 32 ............................ TTGATCAGCGCTTCTTTTCGCTCGATGCCGGC 92392 28 100.0 32 ............................ GGTGTTCGACGCTGCCGAGCGGTTGCCGGTGT 92332 28 100.0 32 ............................ AATCGGCAGCGTCGAACACCGGCTACCGATCG 92272 28 100.0 32 ............................ TGGAACTGGCACAACGCATCTGGTTCCGCGCA 92212 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 92152 28 100.0 32 ............................ TGGGTGGCCGACATCGTTGCGTCGAACTCGTA 92092 28 100.0 32 ............................ GCATGCTGTCCGGCCTGTTGATCGGCCCGCTG 92032 28 100.0 32 ............................ AGTTCGGGACACTGCTCCAGCAGCAGGACGCA 91972 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGGGGGCTTTGCGGCATCGCTCATCACAGGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGACCCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //