Array 1 952939-954186 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041171.1 Salmonella enterica subsp. enterica serovar Thompson strain SH11G0791 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 952939 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 953000 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 953061 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 953122 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 953183 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 953244 29 100.0 32 ............................. CGTTTATGAGATTGTGAGACAGCTTGATCCTG 953305 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 953366 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 953427 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 953488 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 953549 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 953610 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 953671 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 953732 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 953793 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 953854 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 953915 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 953976 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 954037 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 954098 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 954159 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 970357-972097 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041171.1 Salmonella enterica subsp. enterica serovar Thompson strain SH11G0791 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 970357 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 970418 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 970479 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 970540 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 970601 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 970662 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 970723 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 970784 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 970845 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 970906 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 970967 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 971028 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 971090 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 971152 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 971213 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 971274 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 971335 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 971396 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 971457 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 971518 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 971579 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 971640 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 971702 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 971763 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 971824 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 971885 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 971946 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 972007 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 972068 29 93.1 0 A..............A............. | A [972094] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //