Array 1 14-532 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUFJ01000003.1 Brevibacterium album DSM 18261 K318DRAFT_scaffold00012.12_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 ............................. CACTGAGAGGACCTTCACCTCATTTCATGGAT 75 29 93.1 32 ................T.......G.... CGGATGGCGGGGGTGGCTCCCACATACAGATT 136 29 93.1 33 .C.............A............. AACCGCTTCTCCGTCGCGTTCTCACCACCCGGC 198 29 82.8 32 .CA............A.......A....C CGCTGGTAGTAGTCGTAGGCGATGCTCCCCCG 259 29 89.7 32 .CA............A............. GCGGCAGGGAAGAGCCTCTCGGCGCAAGCCCG 320 29 93.1 32 .................A..........C TTGCTTGCCGACGCAAAGTCCATCGGTATCAC 381 29 100.0 32 ............................. TAGCCCTCCGGCAGGGCCGGCAGGCTGGTGTT 442 29 89.7 32 ...............A....A.......C CCGCCGGTCAATCCTCAGCCGTAGCAGCAGGC 503 28 82.8 0 ..A.....T......A......-..G... | C,C [527,529] ========== ====== ====== ====== ============================= ================================= ================== 9 29 91.6 32 GTGCTCCCCGCGTAGGCGGGGATGATCCG # Left flank : GAATATCCGATGAG # Right flank : GAGACCGGCAAGACCACGTCCATGCGCGTCGGATCATCCCCGTCTACGCGGGGAGCACTGACGACGGTCCTGCTCGCCGTTGCCCTGGGCCGGATCATCCCCGTCTACGCGGGGAGCACGCGAGCGTCGTGGCGACCGTGTTGCGCAACGCCGGATCATCCCCGTCTACGCGGGGAGCACGTGGCGGAGGCGGCGTGCGGTGCCTGCGGCGGGGGATCATCCCCGTCTACGCGGGGAGCACGGATTGCGTTCTCAGTATCCGCAGTCGGATTTCGGATCATCCCCGTCTACGCGGGGAGCACTGCAGGTCAACGCCAGTGCGCATCGCCCACATCGGATCATCCCCGTCTACGCGGGGAGCACCCGAGCGTCGTGGCAACCGTCTTGCGCAACACCGGATCATCCCCGTCTACGCGGGGAGCACGTGGCGGAGGCGGCGTGCGGTGCCTGCGGCGGGGGATCATCCCCGTCTACGCGGGGAGCACGGATTGCGTTCTCAG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAGGCGGGGATGATCCG # Alternate repeat : CTCCCCGCGTAGGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAGACGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1383-561 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUFJ01000003.1 Brevibacterium album DSM 18261 K318DRAFT_scaffold00012.12_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1382 29 72.4 32 A.CAC........CCG.....G....... CATCCGCCTTGTCCACGTTCGCGAGTTCGGCC 1321 29 86.2 32 ............G.CG.....G....... CGTGCGTGGATGTGTCGGGCTTGGTGGGCGAG 1260 29 86.2 32 ............G.CG.....G....... AACGTCAGCCCGGGCGCATGGGAGAAAGCCGG 1199 29 100.0 32 ............................. ATGTGGGCGATGCGCACTGGCGTTGACCTGCA 1138 29 96.6 32 ............................C GCCCGCCAGGACGCCATCGGCGGGGTCTACGC 1077 29 100.0 32 ............................. AAATCCGACTGCGGATACTGAGAACGCAATCC 1016 29 96.6 32 ............................C CCGCCGCAGGCACCGCACGCCGCCTCCGCCAC 955 29 100.0 32 ............................. GTGTTGCGCAAGACGGTTGCCACGACGCTCGG 894 29 100.0 32 ............................. ATGTGGGCGATGCGCACTGGCGTTGACCTGCA 833 29 100.0 32 ............................. AAATCCGACTGCGGATACTGAGAACGCAATCC 772 29 96.6 32 ............................C CCGCCGCAGGCACCGCACGCCGCCTCCGCCAC 711 29 100.0 32 ............................. GCGTTGCGCAACACGGTCGCCACGACGCTCGC 650 29 100.0 32 ............................. GCCCAGGGCAACGGCGAGCAGGACCGTCGTCA 589 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 95.3 32 GTGCTCCCCGCGTAGACGGGGATGATCCG # Left flank : TGCCCCGGCGAAGTGCTCCCCGCGGACGCGGGGGTGATCCCGGCGGTTTCCGCGCCTGGCCTTTGCTGACGGAGTGCTCCCCGCGGACGCGGGGGTGATCCCGGATGGACCGCCTCTACCTGCGCTGGATCGAGGTGCTCCCCGCGGACGCGGGGGTGATCCCAACATCAACAACGACCCGAAGGTGGACGCGACGTGCTCCCCGCGGACGCGGGGAGCACACCTTCCGGGGCTCGCGAGTGCGGCCCCGGGAGGGATCACCCCCGCGTCCGCGGGGAGCACGCTTCGGCGTCGAGCATACGAGCCCGGGCCTCCGGATCACCCCCGCGTCCGCGGGGAGCACTCCTCTGCGGTGAGGTGCGCGGCCCGGCGCTCCGGATCACCCCCGCGTCCGCGGGGAGCACTATCGGGCGCACAGGCTCGCCCTCGACGCGGGAGGATCACCCCCGCGTCCGCGGGGAGCACAACGCCGCCAACGCGAACTCGGTGCTCAAGCAGGG # Right flank : ACGCGCATGGACGTGGTCTTGCCGGTCTCGGCGTGCTCCCCGTCTACGCAGGGAGTACGCCTGCTGCTACGGCTGAGGATTGACCGGCGGGGGATCATTCCCGTCTACGCGGGGAGCACAACACCAGCCTGCCGGCCCTGCCGGAGGGCTACGGATCATCCCCGCCTACGCGGGGAGCACGTGATACCGATGGACTTTGCGTCGGCAAGCAAGGGATCATCCCTGCCTACGCGGGGAGCACCGGGCTTGCGCCGAGAGGCTCTTCCCTGCCGCCGGATCATCCCCGTCTACGCGGGGAGTGCCGGGGGAGCATCGCCTACGACTACTACCAGCGGGGATTATCCCCGTCTACGCGGGGAGTGCGCCGGGTGGTGAGAACGCGACGGAGAAGCGGTTCGGATCATCCCCGTCTACGCGGGGAGCGCAATCTGTATGTGGGAGCCACCCCCGCCATCCGCGGACCATCCCCACCTACGCGGGGAGCACATCCATGAAATGAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAGACGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAGACGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 2176-1659 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUFJ01000003.1 Brevibacterium album DSM 18261 K318DRAFT_scaffold00012.12_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2175 29 100.0 32 ............................. GGATGGACCGCCTCTACCTGCGCTGGATCGAG 2114 29 100.0 32 ............................. AACATCAACAACGACCCGAAGGTGGATGCCGC 2053 29 96.6 32 ............................G GTCGCGCCTCGCGCAATCGTGCTGAAGCAGTG 1992 29 96.6 32 ............................G TACGACAGGGTCACCCCCGCCGGTGCAGGGAA 1931 29 96.6 32 ............................T TCCCGCTGGGGCGAATGTCGTGCCCCGGCGAA 1870 29 100.0 32 ............................. GGCGGTTTCCGCGCCTGGCCTTTGCTGACGGA 1809 29 100.0 32 ............................. GGATGGACCGCCTCTACCTGCGCTGGATCGAG 1748 29 100.0 32 ............................. AACATCAACAACGACCCGAAGGTGGACGCGAC 1687 29 82.8 0 .....................AGC.CA.. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.0 32 GTGCTCCCCGCGGACGCGGGGGTGATCCC # Left flank : | # Right flank : TTCCGGGGCTCGCGAGTGCGGCCCCGGGAGGGATCACCCCCGCGTCCGCGGGGAGCACGCTTCGGCGTCGAGCATACGAGCCCGGGCCTCCGGATCACCCCCGCGTCCGCGGGGAGCACTCCTCTGCGGTGAGGTGCGCGGCCCGGCGCTCCGGATCACCCCCGCGTCCGCGGGGAGCACTATCGGGCGCACAGGCTCGCCCTCGACGCGGGAGGATCACCCCCGCGTCCGCGGGGAGCACAACGCCGCCAACGCGAACTCGGTGCTCAAGCAGGGATCACCCCCGCGTCCGCGGGGGTGATCCGCATCCGCCTTGTCCACGTTCGCGAGTTCGGCCGTGCTCCCCGCGGACGCGGGGGTGATCCGCGTGCGTGGATGTGTCGGGCTTGGTGGGCGAGGTGCTCCCCGCGGACGCGGGGGTGATCCGAACGTCAGCCCGGGCGCATGGGAGAAAGCCGGGTGCTCCCCGCGTAGACGGGGATGATCCGATGTGGGCGATG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCGACGCGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-1130 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUFJ01000006.1 Brevibacterium album DSM 18261 K318DRAFT_scaffold00015.15_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2 29 100.0 32 ............................. GCGGTCCTCGATGATCTCGCGCATACTCTCCA 63 29 100.0 32 ............................. ACGGAATGGTCCGTGGTGATCCGCACCAGCAT 124 29 96.6 32 ............................G TAGCCTCCTTCCGGTGCAGGGGTGAGCTTGCC 185 29 96.6 32 ............................G GCTTCGGGCCGGTTGACCGCGAGGCGGCCGTC 246 29 100.0 32 ............................. ATGGTCTTGCCCCTTCTCCCGTCGTTCCGCGA 307 29 100.0 32 ............................. TCACGCTGGATCGCGTATGACCCCTCCGGCGT 368 29 100.0 32 ............................. TGGAGGACGCGCTCCTGGACGCGGCGGCACCC 429 29 93.1 32 ........................G...G GAGATGAGCGATGGCTGAGGAGTACACGGCCA 490 29 96.6 32 ............................T ACTCTCGTCATCATCGTCGCTCTCGGCAGCCG 551 29 96.6 32 ............................G ATCGCCCAGCGGGCGGGGATTCCCCGGCCCGC 612 29 96.6 32 ............................G CGCGTCGCCGCGATGACAGCTGGACTGTCCGC 673 29 96.6 32 ............................G TCCTCGCTCATCTCTGCCCACAGGGCGGCCGC 734 29 96.6 32 ............................G GCAGCCCTGCACGGGGGCGAAGCGCGGTGGGG G [748] 796 29 100.0 32 ............................. GAGCGACGCACAATCGAGATCATCCCAGCCCT 857 29 96.6 33 ............................T GGGAGACCGGGGCCGAGGTGCTCGACGCGACCG 919 29 96.6 32 ............................G CCGAGCGCGGAGCCGAGGAAGGCGAGGACGGC 980 29 100.0 32 ............................. TACCGCACGATGAGGGACCGGACAGTAATCAG 1041 29 100.0 32 ............................. GCGGTCCTCGATGATCTCGCGCATACTCTCCA 1102 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.0 32 GTGCTCCCCGCGTAGGCGGGGATGACCCC # Left flank : GG # Right flank : | # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAGGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAGACGGGGATGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 491366-492175 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384526.1 Brevibacterium album DSM 18261 K318DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================ ================== 491366 29 72.4 80 CC.........AGGC.......C.....T CGGCGGCTCAGGTGCGGGCAGATGCATCGAAAGTGAATGCAAACTCGCGTACCGGCGGATAAACCTACTGGTCAGGAAGT 491475 29 100.0 32 ............................. ACCGACCCGGGCGAGGGTTCTGGCGTGCGCAA 491536 29 100.0 32 ............................. GTTTATCGAAACAGGGGGTGAATATCCGATGA 491597 29 100.0 32 ............................. ACCGACCCGGGCGAGGGTTCTGGCGTGCGCAA 491658 29 100.0 32 ............................. GTTTATCGAAACAGGGGGTGAATATCCGATGA 491719 29 96.6 32 ............................G CACTGAGAGGACCTTCACCTCATTTCATGGAT 491780 29 89.7 32 ................T.......G...G CGGATGGCGGGGGTGGCTCCCACATACAGATT 491841 29 89.7 33 .C.............A............G AACCGCTTCTCCGTCGCGTTCTCACCACCCGGC 491903 29 86.2 32 .CA............A.......A..... CGCTGGTAGTAGTCGTAGGCGATGCTCCCCCG 491964 29 86.2 32 .CA............A............G GCGGCAGGGAAGAGCCTCTCGGCGCAAGCCCG 492025 29 96.6 32 .................A........... TTGCTTGCCGACGCAAAGTCCATCGGTATCAC 492086 29 96.6 32 ............................G TAGCCCTCCGGCAGGGCCGGCAGGCTGGTGTT 492147 29 93.1 0 ...............A....A........ | ========== ====== ====== ====== ============================= ================================================================================ ================== 13 29 92.9 36 GTGCTCCCCGCGTAGGCGGGGATGATCCC # Left flank : CTTTGCCGATGTCATGGAGGGCGCCCAGCAGCCACGCGAGGGTTTCCAGTGCGGTGTCAGCGGGCAGCGTCGGTTCGATGGTCGCTCGCTGCTGTCGCGACAAACGGTGCCGCGCAAGCAGGCGTGCGATTTCCGCGGTGTCCCTCAAATGCACGGGAAGGGGCAGCCATGAGTCGATCTCGCCGACCTCGTCCTTGCCCGTCTTGGCCCAGAGCTGGTTGGCGAACTCACCATCGAAGTTCACTGCTTCACCTCCTGGCTGCGTTGCCGGGGACACTGGATCACTGGCACGATAGTCGAAGCGTAGCGGGTGGAGGGGTCGAAATCTACCACTGTCTTTGAAAAAAATTTGCGCAGTTGCAGAAGCTCGGGACAACTACGGTCTCGTTCCGCTTACACATACCCCGAGGGTACGATCAGGCACGGACATAACCAGTCGTGTAACGCAGAGGCTGCTCCCGGAATCCAGGGGTGATCCGCACTGCCTTTGCACTGGATGT # Right flank : CCCGCCGGTCAATCCTCAGCCGTAGCAGCAGGCGTACTCCCTGCGTAGACGGGGAGCACGCCGAGACCGGCAAGACCACGTCCATGCGCGTCGGATCATCCCCGTCTACGCGGGGAGCACTGACGACGGTCCTGCTCGCCGTTGCCCTGGGCCGGATCATCCCCGTCTACGCGGGGAGCACGCGTAGACCCCGCCGATGGCGTCCTGGCGGGCGGGATCATCCCCGTCTACGCGGGGAGCACTGCAGGTCAACGCCAGTGCGCATCGCCCACATCGGATCATCCCCGTCTACGCGGGGAGCACCCGAGCGTCGTGGCAACCGTCTTGCGCAACACCGGATCATCCCCGTCTACGCGGGGAGCACGTGGCGGAGGCGGCGTGCGGTGCCTGCGGCGGGGGATCATCCCCGTCTACGCGGGGAGCACGGATTGCGTTCTCAGTATCCGCAGTCGGATTTCGGATCATCCCCGTCTACGCGGGGAGCACCCCTTCCTGACCAG # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.28, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAGGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAGACGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 492661-492266 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384526.1 Brevibacterium album DSM 18261 K318DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 492660 29 100.0 32 ............................. AAATCCGACTGCGGATACTGAGAACGCAATCC 492599 29 96.6 32 ............................C CCGCCGCAGGCACCGCACGCCGCCTCCGCCAC 492538 29 100.0 32 ............................. GTGTTGCGCAAGACGGTTGCCACGACGCTCGG 492477 29 100.0 32 ............................. ATGTGGGCGATGCGCACTGGCGTTGACCTGCA 492416 29 96.6 32 ............................C GCCCGCCAGGACGCCATCGGCGGGGTCTACGC 492355 29 100.0 32 ............................. GCCCAGGGCAACGGCGAGCAGGACCGTCGTCA 492294 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGCTCCCCGCGTAGACGGGGATGATCCG # Left flank : GAACTACGTGGGAGAGCTCTTCTCCGCGTGCTCCCCGCGGACGCGGGGGTGATCCGGAGCCGACCGTCCCGCCCACCCTGTCTTGGATGTGTTCCCCGCGGACGCGGGGTGATCCCTGAATGTGAGGGTCGTGACGGTGCCGTCGTCCGTGCTCCCCGAGGATACGGGGATGGTCCGGCTGCGTGCTGGCGTGAGCTGGGTGGCTCGCGTTCTCTGTGGGGTGTGGTGGATGTCTCGGTGGTGGGGGTGGGGTTTGGTTTTCTTTGTGTGGGGTGGGTGTGTAGACTTTCTTCTCGTTGCGCACCTCTAGCTCAATTGGTAGAGCAACTGACTCTTAATCAGTGGGTTCCGGGTTCGAGTCCCGGGGGGTGTACCGGTGGAGGTCCTTCATCAGGCGTGGTGCTTGGTGGGGGACCTTCGTGCATCTCGGGCGTGACTGGGTGTGTTGTAAGTGAATGTAAAGTTGTGGGTCGTCGGATAAACTTGCTGGTCAGGAAGGG # Right flank : ACGCGCATGGACGTGGTCTTGCCGGTCTCGGCGTGCTCCCCGTCTACGCAGGGAGTACGCCTGCTGCTACGGCTGAGGATTGACCGGCGGGGGATCATTCCCGTCTACGCGGGGAGCACAACACCAGCCTGCCGGCCCTGCCGGAGGGCTACGGATCATCCCCGCCTACGCGGGGAGCACGTGATACCGATGGACTTTGCGTCGGCAAGCAAGGGATCATCCCTGCCTACGCGGGGAGCACCGGGCTTGCGCCGAGAGGCTCTTCCCTGCCGCCGGATCATCCCCGTCTACGCGGGGAGTGCCGGGGGAGCATCGCCTACGACTACTACCAGCGGGGATTATCCCCGTCTACGCGGGGAGTGCGCCGGGTGGTGAGAACGCGACGGAGAAGCGGTTCGGATCATCCCCGTCTACGCGGGGAGCGCAATCTGTATGTGGGAGCCACCCCCGCCATCCGCGGACCATCCCCACCTACGCGGGGAGCACATCCATGAAATGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAGACGGGGATGATCCG # Alternate repeat : GTGCTCCCCGCGTAGACGGGGATGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAGACGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 496002-492984 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384526.1 Brevibacterium album DSM 18261 K318DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 496001 29 100.0 32 ............................. GTGCCCGATCCTGATTTCCGCTGGCAGGGCAT 495940 29 96.6 32 ............................T GGATGTAGGTCGCGAACTTGCTCGACGCGGTG 495879 29 96.6 32 ............................C GCCGAGACCATCATCTCCGGACTGCGCGAGAC 495818 29 96.6 31 ............................C GGACTGGTCGCTCCAGAACTTTCGCTCATCC 495758 29 96.6 32 ............................T CACGCCACCACGGTTGCATATGCAACCGTGGT 495697 29 96.6 32 ............................T TCCCGCTGGGGCGAATGTCGTGCCCCGGCGAA 495636 29 96.6 32 ............................C GGCGGTTTCCGCGCCTGGCCTTTGCTGACGGA 495575 29 96.6 32 ............................C GGATGGACCGCCTCTACCTGCGCTGGATCGAG 495514 29 96.6 32 ............................C AACATCAACAACGACCCGAAGGTGGATGCCGC 495453 29 100.0 32 ............................. GTCGCGCCTCGCGCAATCGTGCTGAAGCAGTG 495392 29 100.0 32 ............................. TACGACAGGGTCACCCCCGCCGGTGCAGGGAA 495331 29 100.0 32 ............................. GGCCTCGTGGATGAACTGCACGCCAACGAGAC 495270 29 79.3 93 .....................AGC.CA.C TTCCGGGGCTCGCGAGTGCGGCCCCGGGAGGGATCACCCCCGCGTCCGCGGGGAGCACAACGCCGCCAACGCGAACTCGGTGCTCAAGCAGGG 495148 29 79.3 32 A.CAC.......TC............... CATCCGCCTTGTCCACGTTCGCGAGTTCGGCC 495087 29 100.0 32 ............................. CGTGCGTGGATGTGTCGGGCTTGGTGGGCGAG 495026 29 100.0 32 ............................. AACGTCAGCCCGGGCGCATGGGAGAAAGCCGG 494965 29 100.0 32 ............................. TCGGTGACGGTCATGCCGAGACGCTCTTCGAG 494904 29 100.0 32 ............................. TACAGATGCTGGGCCGGGGGTGTGAGGCTCCG 494843 29 100.0 32 ............................. GTGGGGATGGGACTACCCGCACGATCCTGACG 494782 29 96.6 32 ............................C ACCCAAGGCGGATTCCCACTCCTCACCAGCAT 494721 29 96.6 32 ............................C GGTGGTTTCACGCCCGCGCCTCCCTCACGGGT 494660 29 93.1 33 ................A...........C TCGTGCGCCTGCCCAGGCCACAAGGCCGGTACG 494598 29 100.0 32 ............................. AGTACTACTCGTGCCTGCACGCCGAGCCCACA 494537 29 100.0 32 ............................. TCGCACCCTGCGATGCGGACTTGGCGCGGTCG 494476 29 100.0 32 ............................. GTGAAGGCGCTGGAGGCGAAGGTCGCGGAGGA 494415 29 96.6 32 ............................T TCACGACTCGCGAGGGCCAGCAGGTGCGCACA 494354 29 100.0 32 ............................. CACGGGAGCTCCGAGTAATGCTTGCCGTACCA 494293 29 96.6 32 ............................T CCGCGAACGGCGACGAGCGCGTCGAGAAGGAG 494232 29 100.0 32 ............................. GAGCGCCGGGCCGCGCACCTCACCGCAGAGGA 494171 29 100.0 32 ............................. GAGGCCCGGGCTCGTATGCTCGACGCCGAAGC 494110 29 96.6 32 ............................C TCCCGGGGCCGCACTCGCGAGCCCCGGAAGGT 494049 29 96.6 32 ............................C TGCTTGAGCACCGAGTTCGCGTTGGCGGCGTT 493988 29 96.6 32 ............................T CCCGCGTCGAGGGCGAGCCTGTGCGCCCGATA 493927 29 96.6 32 ............................C CATCCGCCAAGATGATTCCGTGGGCAACGCCG 493866 29 100.0 32 ............................. GCGGCTGACCGCCCCATTCGCTCCGCCCATTC 493805 29 100.0 32 ............................. TACGCGCCGGGCAGGCTCGCAGTGACGCGCTG 493744 29 100.0 32 ............................. GCGGCTGACCGCCCCATTCGCTCCGCCCATTC 493683 29 100.0 32 ............................. TACGCGCCGGGCAGGCTCGCAGTGACGCGCTG 493622 29 100.0 32 ............................. GCGGCTGACCGCCCCATTCGCTCCGCCCATTC 493561 29 100.0 32 ............................. TACGCGCCGGGCAGGCTCGCAGTGACGCGCTG 493500 29 100.0 32 ............................. GCGTCACGGAGCTGCAGCTGGGGTTCGTCTCT 493439 29 100.0 32 ............................. CCCTGGTTGAGTACGCCGGTGGTGTTGAGGAT 493378 29 96.6 33 ............................C CCCGCCGTTGCGCGGGACGAACGTGAACGGGAG 493316 29 100.0 32 ............................. GTGGAGTGGCGCGGCGTCGTCCAGGGAACCGT 493255 29 96.6 32 ............................C AGGCATGGCCGACGCCGCTTCGGGACACAGGC 493194 29 93.1 32 ...................A........C CTGCCGAACTACGTGGGAGAGCTCTTCTCCGC 493133 29 100.0 32 ............................. GAGCCGACCGTCCCGCCCACCCTGTCTTGGAT 493072 28 89.7 32 ...T.................-......C TGAATGTGAGGGTCGTGACGGTGCCGTCGTCC 493012 29 82.8 0 ..........A...TA.....A..G.... | ========== ====== ====== ====== ============================= ============================================================================================= ================== 49 29 97.1 33 GTGCTCCCCGCGGACGCGGGGGTGATCCG # Left flank : GGTCGAGCTGGGTGACTCGGTGCTCTTCGATCCCGAGGACCTCGCCGAGGTGGAGATCGAAGGGGTTGCGTACGTGTTGCTGCGTGAGCGCGACGTCCATGCGATCGCCGAGGCCGATGCGGATGAGGCGACCGGCCTCTATCTGTGAGGACGGCGTTGGTGTTCTCCGGGGCTTTGCCGGCTGGCCTCTGCGGCTGGCCTCTGCGGCTGTTCTCGGCCGGGAGAACTGCTTGATTCTGCGTCGGAGGTCTGAGCTCGGAGGGTGGCGCTGAGCTCGTACGGCGCTTGATGGAAGATCCCCCGCCTGTGCTGAGGCGCAGGCGGGGGATCTTCGTGCTTGCAGGGCTGGGAACGGCGGTGCGGGCAGGGTGCATTGGGGCCGATGTGGGCTGAGCGGAGAGCTTTGCTGCGGGCGGGGAGTGCGACGGCTTCGCGCAGGGAGTGCGACGAAAGTGAATGTAGAATCGCAGGTGAGCGGATAAACCTGCTGGTCAGGAAGT # Right flank : GCTGCGTGCTGGCGTGAGCTGGGTGGCTCGCGTTCTCTGTGGGGTGTGGTGGATGTCTCGGTGGTGGGGGTGGGGTTTGGTTTTCTTTGTGTGGGGTGGGTGTGTAGACTTTCTTCTCGTTGCGCACCTCTAGCTCAATTGGTAGAGCAACTGACTCTTAATCAGTGGGTTCCGGGTTCGAGTCCCGGGGGGTGTACCGGTGGAGGTCCTTCATCAGGCGTGGTGCTTGGTGGGGGACCTTCGTGCATCTCGGGCGTGACTGGGTGTGTTGTAAGTGAATGTAAAGTTGTGGGTCGTCGGATAAACTTGCTGGTCAGGAAGGGGTGCTCCCCGCGTAGACGGGGATGATCCGAAATCCGACTGCGGATACTGAGAACGCAATCCGTGCTCCCCGCGTAGACGGGGATGATCCCCCGCCGCAGGCACCGCACGCCGCCTCCGCCACGTGCTCCCCGCGTAGACGGGGATGATCCGGTGTTGCGCAAGACGGTTGCCACGAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCGACGCGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //