Array 1 33114-32879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTX010000027.1 Phocaeicola plebeius strain 1001262B_160229_B1 NODE_27_length_57165_cov_33.985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 33113 36 97.2 31 ......C............................. TAAAACCTGAAATACATGGCAAAGAAAAACA 33046 36 97.2 30 ...........C........................ AAATGTGAGTGTGTACCCTTCGGACGCACA 32980 36 100.0 30 .................................... ATAGTCATACTGTTTTGTGTTTGTGTTGTG 32914 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 98.6 31 GTTGGTTTTATTATTGTTTTGAATGGTATATCCAAC # Left flank : ACGCAAAACCATGTTTACAGCCGTGAGGTTATAAAGCAGGCTTTAAAACATAATGCCGGAACTATCCACATGGAGTCATTGAAAGATTTCGGAAAAGGTAAGGAAGGTTATGTAAAAGACGAGTATAAGTATCTGCTTCGTTATTGGTCGTATTACGAACTGCAAAGTATGATAGCATATAAAGCGAAATTGGAAGGTATTGAAGTGAAATATATTGACCCTGCATATACCAGCCAGACATGCAGCTATTGCGGAGAACGTGGAGCACGTAAGAAGCAAGAAGAATTTGTTTGTACGAATCCCCAGTGTAAACGACGAGGAGAGAAAATAAATGCAGACTTTAATGCTGCAAGAAATATTGCGATGAGTAAAAAAATCGTAGAAAGATAATTAGAGAAGAATTTTTCTAATTGGGGCTGCTGGAAGTCCTTAACCTGAGATAGGAAACTATACTCGGGAAGTACGTCAAAACATTGAAATTGACAAGCTTAAAACAAACT # Right flank : TATAAAGTCGCCTGAGATGATGTGCGCATGGGGGTTGATAATCGTGCCTTTTTTTACTGATTTTAGGTATAAGGTAATATACTTATAAGGGCTATTATTGCTAACGCATGTGGTTGCTTATCACATACGTTAGTAATCAATCATTGCATACGTTAGTAACAAGAAGCGACTAACGTATGTAATAATCTGTAAGAAGACTTTGCCATTTCAAATAAAATTGTAACTTTGCCATTACAGTCCCCACTAATAAAAAAGGAGGTCAGTATGTACAAGTACAAGCTCGTAAAGAAAATCAATCCGCAGGATAAAGCAGCACCTAAGAAATGGTATGCAATTCCTATCAGCGAAGTTCCACAGACTGTAAAGGCCATGACACGTGCAGCTACGGAAAACACGACAACCGCTCCCATAGAAATGGAAGCCGCTCTTGAATTACTTGGAAGACACGCACGTCAGCAATTGCAGCAGGGACATACAGTAAGAGTTGGTGATTTAGGTAC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGTTTTATTATTGTTTTGAATGGTATATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 107631-106896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMTX010000006.1 Phocaeicola plebeius strain 1001262B_160229_B1 NODE_6_length_115500_cov_30.863, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 107630 47 100.0 29 ............................................... GCAATGATTTCTTACCATATTCAGCGCAT 107554 47 100.0 30 ............................................... TTAATACAGAGCCTTTAATAAATGCAAGAC 107477 47 100.0 29 ............................................... CAAAACAAATACCTATAATGTGATGAAGA 107401 47 100.0 29 ............................................... GAATCAGATTGGTGATAATTTGTACCTAC 107325 47 100.0 29 ............................................... ACCGCATCGACTACAATCCGAATAATGTC 107249 47 100.0 30 ............................................... TTCCAGAAATCAACAGCATTTTCACTCTTA 107172 47 100.0 30 ............................................... TAGAAGAACCCAGTTCCTTACAACTCTACT 107095 47 100.0 30 ............................................... AGATAGACTATCTGAATACGTTGAAAGGTT 107018 47 100.0 29 ............................................... GGAAACCAGCTCGTGTCAGACGGAATATT 106942 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 10 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Left flank : GGCCGACCGTGAAATCCGTACAGGGCCTTACGGTCTGGTGGGTTTCTGGATTGGCGGTACGAATGAGCTGGTTCGTGAAATCCGTTTCTGGAAGACAGCCCGCACACCCCAGCAGTTGAAGCAGTTCATGTGGAAAACGGTAGACGGAAGTGACGAAAATCTGCTGCTGTATTATCCGTTGAACGGAAAGAAGCGCAACCTTGAAACAGGAGAAATCACCGAGGACGAAACCATGCTTTGGGATTTCAGTAACAATGCCAAACATCTCCCTCTTCCTTCAGGGGCTAAGTTTGACGACAATGATGGAAAAGGCTTTATGTTCCCTTTGGTTGATTAATTATAGGTTTTATTAATGAAGAAAGGCTGTCTCCAACACTCTGGTGTGGAGGCAGCTTTTTATGTGTTATTATAGGGACAAATGATATTTAAATATAGAAAAACTTTTAGTATCTTTAAACAACGGGAAACAACTATCACTCCAAGAGCTCCCGTCTTCTTGT # Right flank : TTGTTGATTGTTTCTTGTTGTCTATCAGTAGGTTATAAGTAAATTTAGAAAAAGAAAAAGTTGTTTCTTGAAATAATAAATCCCATATTAACCATGGGATTTATTATTTTAAAAGAGTTCTAATTGTTGTCCTGGTGTTTTTACCCCACTTGCTTTCTTGCCATAAAATAGCTCAATTTCTCCAAACTGTTTGTCTGTGATACATATAATTCCAACTTGACCATATTCAGGTAGAAAGGATTTTACTCTTTTTATATGCACAGCTGCATTTTCACTGCTTGCACAATGGCGTACATAGATGGAGAATTGAAACATTGTGAATCCATCTTTTTGTAGATTTTTGCGAAAGTCAGTATAAGCTTTTTTGTCTTTCTTTGTTTCTGTTGGTAAGTCAAAAAGAACTAAAATCCACATAACTCTATATTCGCTGAAACGTTCCATTAAAATTCAGGATAAATGATTTTTCGTGATTCTCCAGAAAAGCATTTATATAGTGATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //