Array 1 1043992-1042109 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXAK01000007.1 Azospirillum oryzae strain A2P, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1043991 36 100.0 29 .................................... CATGCGCCAAAGGCCCGGAGCCGTAGGCA 1043926 36 100.0 30 .................................... GGTGGTTCTGGTGGGGCATCTAACGTGCCG 1043860 36 100.0 30 .................................... GGCGTGATAACGGTGCCTTTGGACCGCCAG 1043794 36 100.0 30 .................................... GGGAGCAAGCCCACGTCCAGGCCATGACGA 1043728 36 100.0 30 .................................... GTTGTCCGGCGACGTGATCAGGATGGATCG 1043662 36 100.0 30 .................................... CCACCACACAACGACAAAGGCCACCTCACC 1043596 36 100.0 30 .................................... CGGAATCGCGTTGCCCTTGGCGTCGACATA 1043530 36 100.0 30 .................................... GCAGTATCAGGCGGCATTGAGCAACGCCGA 1043464 36 100.0 30 .................................... CGTCATCCGGGCGTTGTCCCTAGCCCGTCA 1043398 36 100.0 30 .................................... GGCGGAGTGGGAGGGGCCCCCGCGCAAGCG 1043332 36 100.0 30 .................................... AGGTCGGCAAGGAAGTCCTTCAGCGGATCA 1043266 36 100.0 30 .................................... GTGCCACGGAGAGCGGCACGCCGTCGTCTC 1043200 36 100.0 30 .................................... AATGGACCTCGAAAGGGACGCCCTGAATAA 1043134 36 100.0 30 .................................... CATCGACCTGTGGGGCTGATCGGCTTTCTT 1043068 36 100.0 30 .................................... TTCGTCCAGTGCCAGGGCACCGAAGGCCTC 1043002 36 100.0 30 .................................... AGCGGCTAGGCAGTGACGCGCTGGGGAGAT 1042936 36 100.0 30 .................................... GGTGCCGGAAGATAAGGCCCGGATGTACGG 1042870 36 100.0 30 .................................... GGTGCCGGAAGATAAGGCCCGGATGTACGG 1042804 36 100.0 30 .................................... GGTGAACACCAAGCGCCCGACGTCGGTGTT 1042738 36 97.2 30 ...............T.................... CGAGCGCCTGCGGTGGTCGCTGAATGGTTC 1042672 36 100.0 30 .................................... GACCGAAACCACCACGACCACGATACCGGC 1042606 36 100.0 30 .................................... CCCCCCAGCATGTGCCCGTTACCGCTCTAC 1042540 36 100.0 30 .................................... GCTAGACGACAACATCGCCAAGCATGGCAC 1042474 36 100.0 30 .................................... ACCGGAGGCATTGGGGCCGACCTTCGGTTT 1042408 36 100.0 30 .................................... ACAGGACTTAGAGCGTACGGCGTCGGCCGT 1042342 36 100.0 30 .................................... CAAGGACGGTCATGCCCTCCTGTTCAAAGA 1042276 36 100.0 30 .................................... TTGGTGACCTTCCTGGTTCTCGTTACTTCG 1042210 36 100.0 30 .................................... CCGGGCAGGTCGGGTTCAGCCGCTCGTTGC 1042144 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.9 30 GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Left flank : GAGACGCCTGCGGGTGTCGCAGTGGGCAAAGGCTAAGGCCATGGTTCACAGCCCTCACGCCGCCGCCTGGGACAAGCCCGGCCCCAGCAGCCGGGCCACCCCGGCCACCAGCGTGTCCAGGGCCTCCATCGGAATCAGGCCAGGGTCGATCCGTCCGCAATCCTGCAGATAGCGCGCCTTGGCGAACAGATCGTCGGCGGAAACCACCTCGCCTGCCGCCAGAGCATGCTCCAAAGTGCCCCGCAGCCGGTCGGCCGCCTCGCACTCCGCGCAGCCGGCCAATTGTTGATAGGCGAGGAACAACGGCATCAGCGACGCGGGCTTGGACATGGAAACCTCCGGGCAAAACCCCGGCGCGTCGACAACTCGCCGGGTGATTTAGGATTGTTTGCCCAAAAGGATTACCAATTCCTTGCTGATTGTTGCATTGCCCTCTGCAAGATTGCTCATGATCCCCCAACGACTACAATCGCCTGTATTTTGCGGATCATCTCGGCAAC # Right flank : CGGACCCCGGATAACCCACTGAAACAAAACGGGTTATCCGGGTTTCTTTTCTGAAGACCTTCCATCGGATGCCCGTCAAAACAGCTTGAACTGTTCGTATTTCGCGGCGGGTTCTTGTTTCGTGCGCGTGTCGAAACACACCATCGTCTGGTATTGACGGTCGGTGAAGGTCAGGATCTGCACCTTTCCCCGCTTCGGCAGGTTGGATCTGATCCGTCCGATTCGCGCCTCGACCTGCGGAGTGCCGGCGCAAAAGCGCATGTAGACGCTGAATTGCGACATCTCGAAGCCCTCATCCAACAGAAAATTTCGGAACCGATTTGCCGCATTCTGATCGGACTTGGTCACAGTCGGCAGGTCAAACATCACCATCATCCACATGAGCCGATACGCGCTGAGTGACATGCGCGCCCTCCTTGCCTGACGGTCCACGAGCGATTTCGAGGGGAAGCGGCGACAGCGGAAGATCGAGAACCTGACGCTCGCCCGATAGAACCTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //