Array 1 806-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRJ01000135.1 Leptospira santarosai strain 56198 Contig135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 805 36 100.0 38 .................................... ATGAGATGACTTGCTTAGGTCATAAGTACGATATGATG 731 36 100.0 38 .................................... ACTGTATCCTCTTCAACCCTAACTCACACTAAGAAACC 657 36 100.0 35 .................................... TCACCAAAGAAGAATGTGCTTACAACGGTGGAATT 586 36 100.0 36 .................................... GAGAAAAGCAAATAAAGGAATGCAACCTATTGAACA 514 36 100.0 36 .................................... TCAAAACGATAAGCTCCTTTCGTTAATGATTCCGTT 442 36 100.0 37 .................................... GATAATCTATCTGGTATTATATTCCCTTCCGTTGGGA 369 36 100.0 38 .................................... AGTTAGTCGTTTGGTATAGTAACGGACTGGGATTTTTG 295 36 86.1 0 ..............................TCA.TT | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 98.3 37 CTGAATATAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : AAATTGGCAAAAGTCACCGAAAAGGAAGACGATATATTCTACCTAACACTCTGTGCCAAATGTGCTTCCGGCGCTCATACCCAGGAGAAAAAATCCGCCTGGCCGGATGCTCCAAAGACACTGAAAATTCTGTAATTCAAGTATCTCTTTCGGGCATAGACATAATTCTCTTTCGAAAACAAATACTTTCCACTTTTCATCTTTGTTTAGTTCCCATAGTATCAATTTTCATTGGATTCCAGAATAGTTTCGATCAGTTGATACTTGGCGCCTATTTTTCTTTCTTGCGAAAATTCTGATTCAATTCATTATTAGAAATCGGCTAAAATGTAATTGAATCCTTAAATTCAAAGCTAAAACACCAAATGAAGCAAAATCCTACTCGTTATAGAAAATATAAATATGAAAAATAATTATATGGAAGGATATGCTTGTTTACTATTTAACAATGTCTTTGTATCTGCAATCCCTCCGCGCAAAAATGATCAAAAAAAAATGCT # Right flank : TCCCCAAAACAATAAAAAAGCCGAAGATCACTCTCCGACTTTGATTTAGATCCTTAACAACATACAAACTACGATAGAGAGTTGTCCTATTTGAAATCTTCTTCGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGCCCCCGAGTGTCCTCAGGGATTTCGTAATATGGTCAAGCCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTTCGAATGCGAGGTTAGGACTCGTGCAAAGCGAAGGCGAAGCAC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 18635-18424 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRJ01000137.1 Leptospira santarosai strain 56198 Contig137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18634 28 96.6 32 -............................ TATTCCTCTTCTTTTTCTATCCCTATGAAATT 18574 29 100.0 32 ............................. AGTTTATCCGCATCACCCTGAGATACAAAACC 18513 29 100.0 32 ............................. ATCAAAACCGCGACCCAGGCCAAGCGGGGCGG 18452 29 75.9 0 .....................CATTT.AT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : | # Right flank : TACCAAGGAGTTTTTGAAAAATGAACTATCAAAACGTTTCAGAATAACGAAATGAAAATCTTAGAATACGACGGTATAAAGAAAACGAGATATCCAAATCCTACTCTAAAATTTCCGATGACATCGGAAGCGATTCTGAATCTTTAACTACCGGCAAAAGCATTTTCTACAAAAATTCTCTTTTTACCGATTTTTGTATTTTTTCTTTCGCGCGGCGGTAAGTTCTCTTTTTTGTTTCATAATATTCTTTTTCTTTGATATATTTTCAAATCCAGAGCCGAGAATGTATGCCACATATTTCGATATTGAAAAGATAGCCTCTCTATCCTCGGCAATTTTGAAACGTGCGCCTTACCCGATCTTATATCTGATAAAAATAATAAATTAAAAACTTATAAAATCATTTCCATTGCAAATACGGAACCCGAGATCGCATCTCTCAGAAAAATCCCTTTCTCAAGTTGATTCCGTATTCCAAATACGCTTTGAGGCAACAACAC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13-1390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRJ01000140.1 Leptospira santarosai strain 56198 Contig140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 13 29 100.0 32 ............................. ACAAAAGATACATCATTTTGATCTCTCACCTC 74 29 100.0 32 ............................. CTGGGGAAGGAAGCGGTATCAAGTGGCTCTAT 135 29 100.0 32 ............................. GTTTGGTCTAACTAACCATCTTGGTCTATCTC 196 29 100.0 32 ............................. AATGCAGCAAAATGTAGAAACTACTACATTAA 257 29 100.0 32 ............................. CTCTCGATCAAATTTATGGCTCTCTATCTGAT 318 29 100.0 32 ............................. GAGATTGCTTACTAGTTACAGGCTTAGCATAG 379 29 100.0 33 ............................. ATAGGGAGATCCCTCGACTACGTATACAGAGTC 441 29 100.0 32 ............................. GAGCAACAAGTTTCTTAATGCTCTCTAAAATA 502 29 100.0 35 ............................. AAGAGCAGTTAGACGAAACACAGAACGAAGATCCA 566 29 100.0 35 ............................. AAGAGCAGTTAGACGAAACACAGAACGAAGATCCA 630 29 100.0 32 ............................. TTCCACGGGTGGAGTTATTAACCTGACGTCAT 691 29 100.0 32 ............................. AAAGAAATAATGGCCGTTAGTTCCTCACTCGA 752 29 96.6 32 ............................T TCAATCCTCGATTTTCTACTTCCGTAGTAATC 813 29 100.0 32 ............................. ATTGTGCACCGTGGGTGCGGAGAGTGAAATGT 874 29 100.0 32 ............................. CGTCAATCGTGTCACCCGCACCGGGTGTTGTA 935 29 100.0 32 ............................. GAAATTCGCTGTGCCATTCTTCCACAGTTTTA 996 29 100.0 32 ............................. ATGGATGAGATCAGAGAGATCAAGGAAACGAT 1057 29 100.0 32 ............................. AGGAAATTAGACGAAATTTGCATGTCGTGTAT 1118 29 100.0 32 ............................. AATGTTTTAGGTTAATCTCTCTTTGGCACGGT 1179 29 100.0 32 ............................. CCATTAGATTGTCCAACGAGGCTCTTGCCCGT 1240 29 100.0 32 ............................. AAAATAAAGAATTTCTTCAGCCAGGATCGAAA 1301 29 100.0 32 ............................. TATTCCTCTTCTTTTTCTATCCCTATGAAATT 1362 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 23 29 99.9 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : AGACGTCGAAAGC # Right flank : AGTTTATCCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 393-543 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRJ01000219.1 Leptospira santarosai strain 56198 Contig219, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 393 29 100.0 32 ............................. AAAGACGTCCAAAAGACGAAAGACGTCGAAAG 454 29 100.0 32 ............................. ACAAAAGATACATCATTTTGATCTCTCACCTC 515 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GAATTTTTTACAATGAAGTTTGTGTATGGAGGCGGCAGCTCTGATTCTGTGGGAGTTACGACATTCGGGAAACTGTGATTTTCTTACGCCGAACTCACGTTAAATACAATGTCTTTTGAATACGAAGTTTAAATTCAACTAACACGAGTCCGGCGTTTTCTCATGCGTTTTTTTTCCATAAAACAAAATGTGGGAACTCCCACAAGAATTGAAAAGTCCGCTCGAATACTCTCGTCTAGATTCGGCACATAGGCAAACGTTGTAGACCGGGAATATGATATCACTGTAAAACACAGGGTTTGATGAGAATCATTTGTTATCTACGCTGACTCGAACGCGAAACCTAAAAATTGGTTGCAAAAATCCGCATTTGTCCTATACAAGTTTTTAGCC # Right flank : | # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 971-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRJ01000261.1 Leptospira santarosai strain 56198 Contig261, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 970 29 100.0 32 ............................. GGGTCTCTACAATTATCGCTATCGGCGAACGT 909 29 100.0 32 ............................. AAAGACGTCCAAAGACGTCCCAAAGACGTCCA 848 29 100.0 32 ............................. TAACAGATGATGAGCACTAAGAGGTTTTGCAT 787 29 100.0 32 ............................. TTTATCGAGGTTTTCTGATAAATCTCCTGCGC 726 29 100.0 32 ............................. AATGAAGGCTCGTGGTTGCGCTCACTGATTAA 665 29 100.0 32 ............................. AATGAAGGCTCGTGGTTGCGCTCACTGATTAA 604 29 100.0 32 ............................. ATTCAGGAAGCACGGCTGAAGATGAACAAAAG 543 29 100.0 32 ............................. TTTGATACGTTAGAAGTGTTCTCTCTAAGGTA 482 29 100.0 32 ............................. GAATTGTTTTTTGTCATCGCAGTATACTACAG 421 29 96.6 32 ............................C GTTACAGTCAGAGTAGATGATTAATTCTTCTT 360 29 100.0 32 ............................. TGCGGAAGAGCGACAACGGTTCTCTATCAAAT 299 29 100.0 32 ............................. CGAGACAAATTTAGAAAAACGAATCTTCTCCC 238 29 100.0 31 ............................. AGGGAGTGCTCAACGTTCCAAAAAGAGCGGA 178 29 100.0 32 ............................. CGTCAGGTGATTCAATACGCGACCGGTCTTCC 117 29 100.0 32 ............................. GTGTTCCGTCTGAGTTTTCGCCAACTCCACAC 56 29 93.1 0 .........G....T.............. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ACAAGTTTTTAG # Right flank : GGTGTTCCGTCTGAGTTTTCGCCAACTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8230-7104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRJ01000066.1 Leptospira santarosai strain 56198 Contig066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8229 29 100.0 31 ............................. ATTTAGCACGGCCACTCCGCGAAGACACGAA 8169 29 100.0 32 ............................. CTAAATTTGAACTTTCCATGTAATCCCATCTT 8108 29 100.0 32 ............................. CTCTTAGGCGAAATGAATCCAGATTTCGACGT 8047 29 100.0 32 ............................. ATTTGGGTTACAACTGTAAAGGGCGATCGTAT 7986 29 100.0 32 ............................. TTTTTTTTGAATATCGCTCCAGTACACATCAA 7925 29 100.0 32 ............................. TTGAAGGCTCTTCTGTTTTGATTTCGGAGGAT 7864 29 100.0 31 ............................. ATTTCACAAGGATATTGAACGCATATTTTCT 7804 29 100.0 32 ............................. TTTTAACGTTTGAAGTCCTTCCTAGTCGATGG 7743 29 100.0 32 ............................. AAAAGAAACTTCTGAATATGGCCTGCGCTTAC 7682 29 100.0 32 ............................. CGAAATACTCTGGAAACACCTATGTCGCTTGG 7621 29 100.0 32 ............................. AGACAGGTCTTTTGTTTTTCGATTTCTCAATT 7560 29 100.0 33 ............................. GCTCTACAAGAGTTAAACAAAGAAGCAGAAAAA 7498 29 100.0 32 ............................. TTGTTCGTTTTGCATTTTGTTTATCTAACTCG 7437 29 100.0 33 ............................. CCACAGGAACCGGAGCCGTATACATATTGATCC 7375 28 96.6 32 .................-........... GTGTTTCATGGAAACATCAAACAAATATTACG 7315 29 93.1 32 .........G...A............... TTTGAGCAAAACCGCCTTGCTTGGCATGAGGT 7254 29 100.0 32 ............................. AAACGAGACGAGGGTCAACGTTTTCTAAGGAG 7193 29 96.6 32 .........G................... CATTAGCAAAAATCGCATCCGATTCCGATGTA 7132 29 79.3 0 T......................ATT.AA | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.2 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGCAGGTTTTGGGACACGCTGTAAGTGAGTTCTAAACTGACATAATATCTCAAGGCCCTATATAAATTTTTAG # Right flank : TTGAAAGTTTTTACAAGATAGAATCAACGAACGAACTTTAAATTTTCGACATTTATATTTTGGAAAAACTTCACCCATTCAAAGATAGATTTGAAAACGCAATCGAAATCCCAAAAAATATGCCTCAAACGTTTTTGTTCTATCTCGAAACGAAGTATCAAAACAGAAAACACCGTTCGAAAATCAAAAAGTTTGAAAAAGAGAACTTGTGAACCGAGGATAATGATGATTTACTGATTTACAACGCTTCGGAAATAATGAAATTGATATGCGAAATTCGATTGTCGTTTTAATTTTTATCGTATCTACGTCTTTCGACCTATCGGCGAAAACCTCCGATTTAAAAGGGGAATGCAAACCGAAAGATTGGATCTGTATTCTTACCCGCAACGAAAACGACAAGGTAGAATTTTACATTCAAAACCAAACACCTTCGGGAGAATATCCCTTTATAATCCATTTTGACTTTACCACTTTGGATAACTTCGAATCGGACGTCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //