Array 1 68766-69787 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPMM01000010.1 Chitinophaga silvatica strain GDMCC 1.1288 contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 68766 30 100.0 36 .............................. GAAAGACCTGTTGCAGTTATTTCGCCTCGAACTTTT 68832 30 100.0 36 .............................. GAATCTGAAACAAGAAAATACCAACCTTGGGTATCA 68898 30 100.0 37 .............................. CTGGAAAAAGTCCTTAGTCTTTAGCCAAACAATTTCG 68965 30 100.0 38 .............................. TCATTTATCAGCTCACGGAATAGGCGAAACTTAACAAA 69033 30 100.0 36 .............................. AGAGTAAACTTGTTCACCAAGTTCATCGTAGAAATA 69099 30 100.0 36 .............................. TATCTACCGGAATAAAAGCATTAACTCATCGGTCGC 69165 30 100.0 36 .............................. GGTTCAACATTTAAAGTCAAGGAGCTACCGAGAAAG 69231 30 93.3 37 ....A............G............ AATGATCCCTTAAACTGGGAGCGTGCTGCAATTAAAT 69298 30 100.0 36 .............................. AACATGGTGCCAATACGCCGGAATAGCTGGGGTAAA 69364 30 100.0 35 .............................. TTAATTGATGTTGAAATAATGCGATATGAATTACG 69429 30 100.0 35 .............................. ATAAATGACACTGGATCTATTACCTGTTTACTATC 69494 30 100.0 35 .............................. AGGCTAAACTAAATACCTAAAGTTATTTGAATCTG 69559 30 96.7 36 .............................G CGCAGTCCGGTTAAATCAACCCCCAAAATGCTTACA 69625 30 96.7 36 ....................G......... AACAGACACAAACAAGCATTACCCGCGCCATGAGGC 69691 30 76.7 37 ..AT......G...G.A........AT... ATTTAGGAGTGAGGCTCACAGCACCTGGGTTGACTGA 69758 30 73.3 0 A..TA....A......A.....C.GA.... | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 96.0 36 GTGCTAATCGAATCATTATGAGATTGAAAT # Left flank : TTGATATAGAAGAATATAAACCTTTTAAATCCTGGTGGTGATGTATGTTATACTTGTATATGATATCTCAGAAAAGAAAGTAGGCAAAATGCTTAAGCTATGCCGGCAATATCTCAACTGGATACAAAATAGTGTATTCGAAGGTGAAATATCTGAAGTAAAGCTGAAAGAATTAATAAATTTAGCTAAAGAAATTTTGGACGAAAAAAAGGATAGTATTATTATCTTCAGTAGCCGACAGGAAAAATGGCTCGATAAAAAGATTGTAGGCATAGAGAAAAATGACCTCTCAAATATTCTGTAGGCGTCGACCTCCTGGAATTCTATAATAAAAAACCCGTTTTGCCGCATAAAAACACATAAGTAACTGATTATCATTAGTCGTCGATCTCCAGGGTAAATCCGGTTATTGGAGGTCGACGACTTAAAGTTGAAAAATGGGCACCTTAATTTTTTGTAAGTAATTGATAATTGTGTTTTTTTATATTAAATAGAGGCGG # Right flank : TCTATTATCAAACCATCCCTTCTCTAATGTGTTAAAATAAAAAAACTCATGCAGGCAACATTATACTTAATCCGCCATGGGCAATCGCAATGGAATCTTGAAAATAGATTTACTGGTTGGAAAGATATAGATCTTTCTCCTACAGGTGTAGAAGTAGCTATAAAAGCCGGCGATGAATTGAAGGGAGAAAAGATAGATATAGCGTTTACGAGTACTTTAATAAGAGCACAACATACGCTTGATATCGTACTAAAAGAGTGTGGGCTTGAAGATATCCCAGTTTTTAAAGATGCTGCGCTGAATGAGCGGGCATATGGAGACCTCGAAGGGTTGAATAAAGCTGAAACAGCGAAGAAATTTGGAGATGAGCAGGTACATATCTGGCGTAGATCCTTTGATGTAGCGCCCCCAGGTGGAGAAAGCCTGAAGGATACTTATAACAGGGTGATACCATATTTTGTAAATACTATACTTCCATATCTGAAAGATGGAAAGGATGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATCGAATCATTATGAGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 141657-143012 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPMM01000010.1 Chitinophaga silvatica strain GDMCC 1.1288 contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 141657 30 100.0 37 .............................. GATATTGAAGATGTAGAAGAAAACGCCTTCATACATT 141724 30 100.0 37 .............................. CTAATCTAAAACAGCCTGCCTATGATGGTAGGTTGTT 141791 30 100.0 36 .............................. TTCTGCAACCGGGAATTATTCATCCAGGACCAAGGC 141857 30 100.0 37 .............................. TGATTTTGTAGCTAACAAAACCAGTAACATGGAACAG 141924 30 100.0 36 .............................. GTGTAGCGGCTGTTACGGGTTTTGCGGGAAGTAGTG 141990 30 100.0 36 .............................. GTTTATTTGTAAACGTTCAGGGAATATAAAAAAATG 142056 30 100.0 36 .............................. AGTTATTACTATTCATCAATTTCAGTCACTATAAAA 142122 30 96.7 36 A............................. AGAGGAAAGCTGAAGCAAAGCTACGTGCTGTTAATG 142188 30 100.0 35 .............................. ATAACATCCGAGCATCGACTTACCTCCCCCGCTCC 142253 30 100.0 36 .............................. TCAGCTGTTGCTTCAATGATAGATCAGGTATTAGAG 142319 30 100.0 35 .............................. ATATTCTCAACGCACTATCACGAACAGCAGGGTGA 142384 30 100.0 37 .............................. GAAAGTGTAATTATATTTCCGTTGATTGCTGTGACGA 142451 30 100.0 36 .............................. ACGATACCTACAGCTGCATTAATTATGTCCGCATCG 142517 30 100.0 34 .............................. AAATATACCAGGCCCGAAACCTATATGCCCAAAG 142581 30 96.7 36 .................G............ GATGATATGCAGAGGGAAGTATCATTTTGTAAGGTT 142647 30 83.3 35 A............C.A.....G.......T CTTTGCAAAGAACTTGTAGATGTAGGTCGCGGAAT G [142664] 142713 30 83.3 35 C............C.A.....G.......C GACCCTGAACAGATTAACATGAATCTGAGAAAAGC A,G [142715,142731] 142780 30 80.0 36 A............C.AA....G.......C GGTTCTAATGCAGAAAAGTGGACCAAGTTAATAGCA A,G [142782,142798] 142848 30 76.7 36 A............C.GA....G.A.....T GTAATCTAAAAAAGGTTACAAGCATATATAATAATT A,G [142850,142866] 142916 30 80.0 35 .............CCG..A..A.......C ATGAATCGCTTAGGTATCTGGATAGATTCGGATTG A [142919] 142982 30 80.0 0 .CG............GA....A.......T | G [142997] ========== ====== ====== ====== ============================== ===================================== ================== 21 30 94.1 36 GGTTTAATCGGACTATGATGGTATTGAAAG # Left flank : AGAAATGTATTACAAGAAATCAGAGCCACATAAAGCATCTGTAACTGGTGATACCGTTGGAGATCCATTTAAAGATACTTCTGGTCCGTCTATGAACATCCTCATTAAATTAATGTCGATCGTTTCACTGGTAATTGCACCTACATTAGGAGAATTATATCATACTAAACCTACTCCGGAAACTGTAAAAACAGCTCCTGTTCCTGCTCCTAAGGCAACTCAACATAAAACTGTTGCTTTGCTGGATCAGCATAAATAATTATTGTATTCTTCTTTATGGGCAGGGGTATTCTCCTGCCCTATTTTTTTTCTCGTCGTCGACCTCTGTTTTTTAACTTACTTTCTTACATGAAAATGCTTCATTTCTATCTAAATCATTGATTACTAATGGTCGTCGATCTCCCGGTAAAAACCGGTTATTAGACATCGACGACTTTTTGTGTTTATTTTGATGATTGAGGTGGTTGATGGGAGTGGGTTTGAAGGAGGAGAAATGACGG # Right flank : TATGATAGTCAGAGCGTCTTTTCAAAACTGCGACTAAGATTTTATCAGAAAACAGATCAAAATAATCTTTCTCAAACCATTTTTCTTCCCTCCCCCACCACGAACTCCCCTAAAAATTTTTTTCTTGGATAATTCCCAAACTTCTTTACTTTTGTACTGTAATAAATTTAATTACAGTTTTGTTTTAAACTGTAACAATTTTTATAACAATTAAAACAATCGGCCATGCAGGCCTGTATTTAAATAACATTTAAAAGGTAAAATCATGAAAGTAGCCATTATCGGAGCATCAGGTTTCATCGGCTCAGCTTTGCTGGATGAAGCACTCAACAGAGGGCATGAAGTAACTGCTATAGTGCGTCATCCTGAAAAAATCAAGCTCGATAACCCGAATCTTACTGTAAAAAAGGGTGATATTACTAATGAAGCTGAGCTTGCTGAAGTGCTGAAAGGCAACGATGCTGTAATCTGCTCCTATAAAACAGATAATAAGGTAGACG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAATCGGACTATGATGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-45] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 250683-250066 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPMM01000010.1 Chitinophaga silvatica strain GDMCC 1.1288 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 250682 29 100.0 36 ............................. TGATTTTTGAAGTGTACTTTCTCCTGCGTGATAATA 250617 29 100.0 36 ............................. CTGCCGGTGGTGCTATTTCTTTTCTGACAAACAAAA 250552 29 100.0 37 ............................. AGGCAAGCGCGGAACAAACGGACGACGGTCAGTAATG 250486 29 100.0 36 ............................. TTAGCGATGACCTTATTTGCATTTTCACCGCTTAAA 250421 29 100.0 36 ............................. TACGAGTTGAAAGGTCTTTTGAATAATGCGCAACAC 250356 29 100.0 35 ............................. ATATTCGGCGGGCGGGTTCAACTCCCGGACCTTCA 250292 29 100.0 37 ............................. TGGAACAACAGTTGGTGGCAATTGCAATAAGTTTTTA 250226 29 100.0 36 ............................. TGTTTTCTTGTTCCTCGCCATACTCTAATTACGTAA A [250210] 250160 29 93.1 36 .................C.....T..... AAAGCTAAAAACGACCAGAAAACAACGATAGAAAAA T [250144] 250094 28 79.3 0 ...-......G...T.C......T....A | A [250077] ========== ====== ====== ====== ============================= ===================================== ================== 10 29 97.2 36 GTTGTAATCGTACAATGTTGAATGGAAAT # Left flank : TCGTTTGTTTACTAATCTTTTGCAGAATGCAAGCCAGGCTATTCCTGAGAATAAGCATGGCCACATAGTTGTAAGGCTTCAGCAAACAGCCGATAATCATGTATTGGTAAGTGTTTCGGATAATGGAGAAGGTATTTCAACTGAAATTCAATCACGCATCTTTGTACCTAACTTCACTACTAAATCATCTGGTACTGGTCTTGGTTTGGCGATGTGTAAGAACATTGCGGAACAGGCAAGAGGTGAAATATGGTTCGAAACCAAGCTGAATGAAGGCACAACGTTTTATGTGAAACTTCCTTTGGCAGAATAAGTCGTCGACCGTTGAAATTTTCGTTTGTCCTTGCAGGTGATTTTAGCTATTTTTTGCTTAACTTATTGATTCTTATTGGTCGTCGATCCCCGGCATAAAACCGGTTATTAGACATCGACGACTTTTTGCCTATGTTTTTGAGGTAAGAGGGCAGGAGGGGCAAGGGTTTTGGCGGGAGAGGAGGAGG # Right flank : AAATCTTACTAATGTCTGTGTCCTTGTATTTTTACCATTATTACTAAATCGAATTTTACAAACCTCAAAATGCATTTTCTTGATCCTCTGTCAATCAAATTATAATTTATATTATTAAATGTGAATTACTAATTTTAGTTTGATAATATATTTATAATTAAATACTTATGAAGTATTTAATTATAAATATTTGGTGTTGTAAAATGTATTGTTCGGACTTTTACAGTATTTTTATTTTACAAAAATTCCCCGAATAAATTCCTCTCAATGATTTAATCTATGACTGTAATTGATGAAATTAAAATTGTTGTTGATTCCTTAAGAGAAACGGAGAGAACATTTTATATGAATAATCCTGATCCAGGGTATTTTAAAATGGATTCAGATAAACATTTGGTGAGATTACTCTTGATGAAGGAAAGGTTAGGTGATGTTACTGCCAGGATAAAGCAACTAGTTGAATCAATTTATAATAATTTCAATCATATTGATAAGGATAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATCGTACAATGTTGAATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //