Array 1 282167-281600 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVX01000002.1 Pectobacterium versatile strain F135 Pectobacterium_carotovorum_strain_F135_contig#2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 282166 28 92.9 32 ...........TG............... GAGTATGAACAGTATGCCGAGCGCGGGGAAGA 282106 28 96.4 32 ...........T................ GGCAAACGCAGATACGAGCGTTAATTCTGTAT 282046 28 100.0 32 ............................ AGATAATGCGTGCGGTATGGTCGCAGCCGTCA 281986 28 96.4 32 .....................C...... CACACACCTGCATGTGTCAGCACATCAAGTGG 281926 28 100.0 32 ............................ ATCATGCGCACCAAATAAAAATAACTAACTTA 281866 28 100.0 32 ............................ GACATCGTGGTGACGCGCACAGTGCGTAGATT 281806 28 100.0 32 ............................ AGTCGGCCGTAAATGAAAGATGCGACCGAAAT 281746 28 100.0 32 ............................ AAACCCATGAAGATTTCGGACTTTCCGACCAA 281686 28 89.3 32 .G.........T...A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 281626 27 82.1 0 ...........T.C........-...TG | ========== ====== ====== ====== ============================ ================================ ================== 10 28 95.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAACGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGTTGGTTAGCGTAAAACTTTAAC # Right flank : CTTATCAGGATGCGTCGCTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACTGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTAGGGTCGGCATTTTCGTTAATCGTTAGTGCCGCCGAGGTGTGCTTGATGAACACCAGCATCAGCCCGACGTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATTGCCTTATTCCTGCTATCAGGCTTCACGCGCCAGAATAGGTCGCAGGAAGCGCGCAG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4137-1649 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVX01000056.1 Pectobacterium versatile strain F135 Pectobacterium_carotovorum_strain_F135_contig#56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4136 28 100.0 32 ............................ AGACAAGAACTCTTCAACAGCAGGCGAGCAAA 4076 28 100.0 32 ............................ GTCTGTTAAATCTGTCCACGCGTCTGGTTATG 4016 28 100.0 32 ............................ TGCGGGCATCGTGGCAACGATTGCAAAACGGA 3956 28 100.0 32 ............................ AACGGACCAGATGAAGGGGATCGCCAGTAAGT 3896 28 100.0 32 ............................ TTGTCCGACAGCCGGTAGTACACGTTGTCGAC 3836 28 100.0 32 ............................ AGCCCCAAATTACTCCGCGCTGCGGCCTGATC 3776 28 100.0 32 ............................ AGCCAGATTTTAGCGCTGACAGATGAGCGGGC 3716 28 100.0 32 ............................ TGCATCGGTCGTTCTGATGACGTCAAGCATGC 3656 28 100.0 32 ............................ ACTCAATTAATTTCGGGGCGTTTTTATATTGC 3596 28 100.0 32 ............................ TGGCCGGGGCAACCGGTACACAGTTTCACCTC 3536 28 100.0 32 ............................ CAGCTCCGGGTTGACCACAACGCGCAGGCATA 3476 28 100.0 32 ............................ AATTGACACTGGTTACCTCTGGCCGCGCGATA 3416 28 100.0 32 ............................ TAACGTAAAACCGTCACGCACATTGATGACGC 3356 28 100.0 32 ............................ GCAGAACTCTATCGTCACCTCCGTAAGTTGGT 3296 28 100.0 32 ............................ TGACTTTTCGTCTGAATATGCAAACTGCGTTG 3236 28 100.0 32 ............................ GCAATGGCTGGTGCGCTGGGCATGTCTACCGA 3176 28 100.0 32 ............................ GAGTGACGCCGGGACAAACAGTGACGAAGACC 3116 28 100.0 32 ............................ ACCAGCAGTTGAGGTCATTATGAAACCTGACA 3056 28 100.0 32 ............................ ACGTTCCGCCCCGTAGTTTGATTGACATACTT 2996 28 100.0 32 ............................ TATAACGGAACGACAATTTGCGTACTGATTGC 2936 28 100.0 32 ............................ TGCGTACCGGAAACTGACACATTAAACCCGTC 2876 28 100.0 32 ............................ TTGGCCGGATTACCGGTGATTTTTTTTGAATT 2816 28 100.0 32 ............................ TCAGCAGGTCGCGTCTATTAACCCTGCATGAG 2756 28 100.0 32 ............................ CCATGCGCTTTGGGTTTGATGTGGTCTACAGT 2696 28 100.0 32 ............................ GGAATATTCAATGTTCCCGCTCATATGATTAA 2636 28 100.0 32 ............................ ATCAAGTCTAAGCAAACCGTCACGCAGTCGAT 2576 28 100.0 32 ............................ TTTCTGAGTGGTCAATTTCAGAGTGTCACCAA 2516 28 100.0 32 ............................ TTCAACCGAGCTATTACCGAAACGCACCTTTG 2456 28 100.0 32 ............................ GTACAGCGGAGGTGAGGCTATGAGAATGGACA 2396 28 100.0 32 ............................ GACGAGTGGGAAGCGCTGCGCGTAGGGAAGGC 2336 28 100.0 32 ............................ TGTTAGCGAAAGACATCGCACCTGCTGCTGCT 2276 28 100.0 32 ............................ ATCGACTGAGCGAACTTAGGTTTTTCAGTGTC 2216 28 100.0 32 ............................ GTCAATTGAAAGTGTGGGCGATGACTGGACGC 2156 28 100.0 32 ............................ AACCTGCGCGGTGCCAACCTGCCTGATCGCAC 2096 28 100.0 32 ............................ GACATGCAAGCACGCCAGCGTGATGTCGCTGC 2036 28 100.0 32 ............................ GCACAGGTTGGCACCGCGCAGGTTGGCACCGA 1976 28 100.0 32 ............................ GAAAGCTGAACGGCTGCAAAACGGAAATAGAA 1916 28 100.0 32 ............................ AGCATTTTACGGGATGACCTGGACGGCTTCAG 1856 28 100.0 32 ............................ TTACCGACCGACGATGCTGATAGACCGGATGT 1796 28 100.0 32 ............................ TGACGGGACAATATCAGGCATGGGAATCCTGG 1736 28 100.0 32 ............................ AGACAGTAAGGGATGGTAAAAATATAACAATT 1676 28 78.6 0 ...........C........T.C.TCC. | ========== ====== ====== ====== ============================ ================================ ================== 42 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAAGTAGTACTGCGCCAGCGCTCACCCTCGTTAAATGACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGAGTTTATTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAATTGTCCTTACAGGGAAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAACGAAATAAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGATGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCCTGGAAAACGGCAATATTTGGTTGTACCGACCCCATCTCATCGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 100-848 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVX01000069.1 Pectobacterium versatile strain F135 Pectobacterium_carotovorum_strain_F135_contig#69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 100 28 100.0 32 ............................ TGCGATATACGACACAACGAAATATGCGATAC 160 28 100.0 32 ............................ ATCATCTGACAACTCGGCGTTAATCAGGTCTG 220 28 100.0 32 ............................ GGTGACCAATGGCTGATTGTCGTTTATCGTCA 280 28 100.0 32 ............................ GGGGAGCGGAGCAAAGAACGGGCCGGTGACCA 340 28 100.0 32 ............................ GCATGAAATCACAGTGCTGACCGGCAAGAAGC 400 28 100.0 33 ............................ AGCGTGTAAATCAGCGTGACGTCAATATCTGAA 461 28 100.0 32 ............................ CTACAGTGTATCGGCGGTTTCATAAGCATTCT 521 28 100.0 32 ............................ TACTCAGGTAGCACCGTTTCACGCATTGCCAC 581 28 100.0 32 ............................ AGACAAGAACTCTTCAACAGCAGGCGAGCAAA 641 28 100.0 32 ............................ GTCTGTTAAATCTGTCCACGCGTCTGGTTATG 701 28 100.0 32 ............................ TGCGGGCATCGTGGCAACGATTGCAAAACGGA 761 28 100.0 32 ............................ AGCCCCAAATTACTCCGCGCTGCGGCCTGATC 821 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATAATCAATGAGTTACGGCTAGGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCAACGG # Right flank : AGCCAGATTTTAGCGCTGACAGATGAGCGGGCGTTCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 134954-135162 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDVX01000016.1 Pectobacterium versatile strain F135 Pectobacterium_carotovorum_strain_F135_contig#16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 134954 28 92.9 32 A..T........................ TGGCGTCACGTCAGCACATGCCGAAACCTCAC 135014 28 92.9 33 ...........TG............... ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 135075 28 100.0 32 ............................ TGAGAGATCAGCACTCCGTCGTCATCGTTGCA 135135 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.9 33 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTCGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTACTGGTCTTGCGCCGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGGATTCAATATTGGCAGGAGTATGAAAACGACAATGTGATACTCTCCCCGATGCCCGGTGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACACGCTCGGCGCAACCCAGTCGCTCAACGCCCAACCTATGCGAAAGCGGTCGCTGCATTGCTGCTGATCGCGCTTTATCTCGCGCTCCCGCTGCATCTCTACCTGCGTGAACCTCTCCCCTACTGCGCCTTTAGCCCTGACGGCCAGCAGTTAAGTATCTGTCTGGGAGAGAATGATGAGCGGATTATTGTGGAGTGATGG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTTGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCAGTCGGGTTGGAATGCCTGGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAGACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //