Array 1 105726-106609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOFF010000007.1 Escherichia coli strain ARS-CC11349 NODE_7_length_198275_cov_16.556746, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105726 29 100.0 33 ............................. GCGGTAAAATTGTTGCTACCGTCTGGCCCTTGC 105788 29 100.0 32 ............................. ACGGTGCAGGATCTGTAATTCTTGCTCGCGAT 105849 29 100.0 32 ............................. AGTTATCAGGATTATTCCCGCTCCGCCGCCAG 105910 29 100.0 32 ............................. TCGTTTTTGTGGTGGGAGTGTGCGGATTGGTA 105971 29 100.0 32 ............................. GCTGACATTGTCAGCTATAACCTTACAATGTG 106032 29 100.0 32 ............................. ACGTCCCGCTATTTCCTGGACAGTGTGTAGCG 106093 29 100.0 32 ............................. GCATTCAGCTGCAATTAGTAGAAGACGATACA 106154 29 100.0 32 ............................. GCGGCGCTAACGTGATAATCACGATCAATTAT 106215 29 100.0 32 ............................. CGGGCGTTAACCTTTTTATAGGCATCTTCCTT 106276 29 100.0 32 ............................. ATTTCGAAACCCCGGCAATATTCTTTAATGTG 106337 29 100.0 32 ............................. CTTTTTCCCGTGACAAGATCCAGTTAACTGTT 106398 29 100.0 32 ............................. CATCACTGGACGCCCATTTGAATAACTCACAG 106459 29 100.0 32 ............................. ATTCAGCAAATAGCGAATTTCATAAATATGAT 106520 29 96.6 32 .T........................... TACGTTAAACGCCATCTGTCATGGGTCGTCAT 106581 29 93.1 0 .T..........................A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCGTCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCAGTGAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATCTTAAACATTTACCTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATATGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132316-133319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOFF010000007.1 Escherichia coli strain ARS-CC11349 NODE_7_length_198275_cov_16.556746, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132316 29 100.0 32 ............................. CCGGAAACAACGATTACGGTCGGCCAAAAGAC 132377 29 100.0 32 ............................. TTGTTTCTCATTGCCGATTTCACCGATTTTAT 132438 29 100.0 32 ............................. CATTGGCGATCTGTCAGAGGAGTTGACAAATA 132499 29 100.0 32 ............................. CACTTTTACGACTGCACAACGGGTGAGTACGA 132560 29 96.6 31 ............................A TACGGTCAAGCGATATCAGGGGTACTGTGTC 132620 29 100.0 32 ............................. GGCGCCGCATCTTTATCGTAAAGCATGTAAAG 132681 29 100.0 32 ............................. GTCCACACGGAAAGTCAGTGGATTGAGACCAC 132742 29 100.0 32 ............................. ACCGCTCACACCTAGACAAGCGCCACTAACGT 132803 29 100.0 32 ............................. AACGCCGCATCAGCTAAATACGCTAAAAAAAT 132864 29 100.0 32 ............................. CGGCTGATACTCAGGAGCAGGCCAGAGAGCGT 132925 29 100.0 32 ............................. TACCACCTGTGTATTGAGTTACGTCGCCGGGG 132986 29 100.0 32 ............................. GAGCTTCATCGGTGGTTCTGGGAGCAACGGGA 133047 29 100.0 32 ............................. GCACAAGTGACTACATCAAGGATGGGGAATGG 133108 29 100.0 32 ............................. ATTAACATTGCAATTGAATTGACGCGTATGAG 133169 29 100.0 32 ............................. CAGGCAGCACGGCGGGTTTTGCCCGGATATTT 133230 29 100.0 32 ............................. CAAAACCAATAGGTGCTTTCCACATTGCAGAA 133291 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTGGAAGTGCGTGCTGGTGTTTATGTTGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : GCTCTCGGTTCTGGGGTACTGTTACCCATAACTGAGCTCCCCCGCGTCAGCGGGGGAACTCCCAGCTCCCATTTTCAAACGCCTCATGACGCCTTCACCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCCTCTGGTGTATTTACACCACTATTAAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //