Array 1 397770-400201 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVJL01000003.1 Akkermansia muciniphila strain BIOML-A17 scaffold3_size499884, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 397770 31 100.0 34 ............................... TTTTAGTTTAACTTATTTTATTACCTTGTCAACT 397835 31 100.0 34 ............................... AACGTTTTTGGTAGTCACAATGTGGAATCCGTTG 397900 31 100.0 33 ............................... TATCTTGTTGTCAAATGTTTTTTGTTTTTGTAT 397964 31 100.0 34 ............................... ATCGCAAAAGTCACGATAGGAACCGCAATCGGAT 398029 31 100.0 33 ............................... CTATTGTTTAATGTTTAGTGTTTTATTGTTTGG 398093 31 100.0 33 ............................... CATGTCATGCCGTTTTCGTTGGTTTTCAGTGGA 398157 31 100.0 35 ............................... ATGATTTAGTTTCCTTTCTTTTAGGGGGTTATGCG 398223 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 398288 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 398353 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 398417 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 398482 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 398547 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 398612 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 398677 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 398742 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 398807 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 398871 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 398936 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 399001 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 399066 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 399131 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 399196 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 399261 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 399326 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 399391 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 399456 31 100.0 34 ............................... TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA 399521 31 100.0 34 ............................... TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG 399586 31 100.0 34 ............................... AGCATCTAAAATATGTGCGTAAGCTTCGACACGG 399651 31 100.0 34 ............................... ACATTATATCATAAAAATAAGAGAGTTATGAACA 399716 31 100.0 34 ............................... GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA 399781 31 100.0 34 ............................... TTATCGTCCAACGAAATAATGACGTCCTTCCACG 399846 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 399911 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 399976 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 400041 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 400106 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 400171 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 38 31 99.7 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 63499-68019 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVJL01000002.1 Akkermansia muciniphila strain BIOML-A17 scaffold2_size448847, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 63499 33 100.0 34 ................................. AGGAGAATTGTTGTAACTGCTTAATGGTTATACA 63566 33 100.0 34 ................................. ACCCGTAGGTAAAATAGACCAGACCGCCGTTACA 63633 33 100.0 34 ................................. GATATATTTGCATGGGACGTTGCCCCCGCCCTCG 63700 33 100.0 34 ................................. ATCCGCAATGTTAAAGGCTCTACGGGCGGCGTAG 63767 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 63834 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCTTCCCATGTGTGC 63901 33 100.0 34 ................................. CTTTCTTTTAGGGGGTTATGCGGGGGTGATTCCC 63968 33 100.0 34 ................................. AGAAGGGCCGGGGTTAAACCCGGCTGACTAGCTT 64035 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 64102 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCCTGCCACATGTGC 64169 33 100.0 34 ................................. TCCATCTTGCAGTTTGATTTGAGTGATCATGATT 64236 33 100.0 34 ................................. AGTGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 64303 33 100.0 34 ................................. CCCGGTAGGTAAAATAGACCAGACCGCCGTTACA 64370 33 100.0 33 ................................. TGAGACGTCATAGTTAACGCCCTGCCACATGTG 64436 33 100.0 34 ................................. TTTAGTTAGTGGTTTTGTTGTCCGGGGGTTGCCC 64503 33 100.0 34 ................................. CGTCACCTATGGGGCGGGGTTGCCGTGTGATAAG 64570 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 64637 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 64704 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 64771 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 64838 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 64905 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 64972 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 65038 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 65105 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 65172 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 65239 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 65307 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 65374 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 65441 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 65509 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 65574 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 65642 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 65708 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 65774 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 65841 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 65908 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 65975 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 66042 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 66109 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 66175 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 66242 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 66309 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 66376 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 66443 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 66510 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 66577 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 66644 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 66711 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 66778 33 100.0 35 ................................. TCCTATCGAACGCACGTTGCCACCATTGACCGAGC 66846 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 66913 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 66981 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 67047 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 67114 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 67182 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 67249 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 67316 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 67383 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 67451 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 67518 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 67584 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 67651 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 67718 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 67785 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 67851 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 67918 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [67937] 67987 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 68 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CCTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //