Array 1 1126-121 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNAM01000031.1 Deinococcus indicus strain CGMCC 1.18440 sequence31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1125 29 100.0 32 ............................. GCTGAACCGGCCCCGCACCCCAGAGATGGGAG 1064 29 100.0 32 ............................. TGGGGCATCGGGACTGACGGGCAGGTAGACAG 1003 29 100.0 32 ............................. ACGGTCATGCTCGGCGTGGACCCGCCCGTCGA 942 29 100.0 32 ............................. TCCGTAGGGACTGGCAGGGGCGGTACTGGAGG 881 29 100.0 32 ............................. TTTTCCCGCTTCTGGGACGTCTACCAGCACCA 820 29 100.0 32 ............................. CCCCGCGCGGTGGCGGGGCAGGGCGGGAATTG 759 29 100.0 32 ............................. TAGAACCGCCCCGCATGGATCAGATGCGGGGC 698 29 100.0 32 ............................. GCGTCTGTCGGGAATGCCAGCGCCGCGCCGCT 637 29 100.0 32 ............................. TTCAGGTGAACCTGAGCACCCGCCCATTGGGA 576 29 100.0 32 ............................. GCTGGCACGAAATTCACCCGGACCGGCGAGCG 515 29 100.0 32 ............................. GCGGCATTCAACCAATACTCGGTTGCGTATGA 454 29 100.0 32 ............................. ACGACCTTGGGAGCCTTGTCCTCTTTGCTGCG 393 29 100.0 32 ............................. CCCTCGCAGGCGTAGAGAACACGGACCGCCTC 332 29 100.0 32 ............................. GCTCGCAGGGTCGTCTCGGCGTACACCGACAC 271 29 100.0 32 ............................. CAGGTGCTTTGAGGGGGTCGGTCCCGCGTAGC 210 29 100.0 32 ............................. GCCTGCACGCCCAGCACCTGCCGGTACCGGGC 149 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : CCACCACCTCCTCGGCGGCGACCAGAACGACCCCGAACCCACCGCGCCCGGTGACCTCTGGGACCCCGAAGGCGACGTCCAGGGCGGCATCAACCACGCATGATCGTCATGACCCTCGAAGCCGTCCCGCCCAGCCTGCGCGGCGAACTCAGCCGCTGGCTGATCGAAGTGCAACCCGGCGTGTACGTCGGCAACACCACCGCCCTCGTCCGCGATCTCCTCTGGGACAAAGTCGTGCAGTACGCCCGCACCGGCCGCTGCACCCAGCTGTACCGCGCGAACAACGAACAGGGCTTCGCCATCCGCCTGCACGGCGACCCCCGCCGCACCCTCGTCACCCTCGACGGCTTCCAGCTGATTGCCGTTCGCAACGCCCGTCATGCAGAATTGCAGGGGGAATACGACCCTCCCGAGGACGATGACAAACTGTGAGCTGCATCCGATCCCGACGAAGAGACTTCCAGGGGTCACATACCCGCTGCACCTCGTGTTTCTGAAGT # Right flank : GCCCTCAATAACCAGTTGCAAAGCCCGCTCAATCCGAGCGGATGCGCGAAGGAGAGTGAACTGGATAGAGTTTGGTGGAGGGTAAGTTCAGTGTGATCCACACTGGAGGACAGAATGTCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14156-16929 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNAM01000031.1 Deinococcus indicus strain CGMCC 1.18440 sequence31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14156 29 96.6 32 ............................A TCCTGTGAGTCTGGGCCGAACGGGCGCGGCGG 14217 29 100.0 32 ............................. GGACTGTCGCCGGGGCGGCCCTGCGGTGCGGC 14278 29 100.0 32 ............................. ACGAGCTGAACCAGATGGGTCCCACCATGTTC 14339 29 100.0 32 ............................. GGACTCGCCTGTAGTTGGTGCTGTCTGGTGGT 14400 29 100.0 32 ............................. TCAGGGCCGGGGATTGGCGCAGCACAACGGAG 14461 29 100.0 32 ............................. ATGCAGCGCCGCAGCGCCGCACTGGACGGGGT 14522 29 100.0 32 ............................. GTCTTGAACGTCAGGGCGTCGGCTGGATTAAC 14583 29 100.0 32 ............................. AAGAACCGCATCGCCCTGACCCTGCTGGCCCT 14644 29 100.0 32 ............................. TTGTCACCGACGCCCTGGCAGCGGGCCAGTTC 14705 29 100.0 32 ............................. AATCCCTTCTGAGCGGTCCCCCAGTCCGTGGC 14766 29 100.0 32 ............................. TTATCACGGTGAGACACAGAGTGCAAACTGTG 14827 29 100.0 32 ............................. TTCATGGTCATGACCGACACCAGCAAGGACGC 14888 29 100.0 32 ............................. GCGGTCTTGGAGAACTCGGCAGTCACAGCGAG 14949 29 100.0 32 ............................. GCGTCGACGATGCGCCGGGCACGCTCGCGGGC 15010 29 100.0 32 ............................. TGCGCGGCCTGAACCGGTGCGCCCTGGGCTGC 15071 29 100.0 32 ............................. TCGTTTGGCGCGACGGGCGCAGCTCAGATCAC 15132 29 100.0 32 ............................. GCCTGAGCCGCGTCATGCGCCTGCCGGGCTTC 15193 29 100.0 32 ............................. CCGTCGACCTGGATGCACGCATGCCGCTGACC 15254 29 100.0 32 ............................. CAGCAGCGAACGGAGCGAGCATCAGGGCGGTC 15315 29 100.0 32 ............................. ACCAGGGTGATCTTGTTACGCCTGCTGAGTTG 15376 29 100.0 32 ............................. ACCGAACGGCTCACGGTGCGCGTCGCGCCGCA 15437 29 100.0 32 ............................. TCATCGCCGGGTATCAGGCCGTCTGCTACACC 15498 29 100.0 32 ............................. CCCCTTTATCCGGGGGGTGAATACGGACCGGC 15559 29 100.0 32 ............................. ACTCCCGGCCTGCCGACCGGAGGGAGGCAGGT 15620 29 100.0 32 ............................. GACACTCCGTCCTAGGGGGGACACAACATGCT 15681 29 100.0 32 ............................. GACACTCCGTCCTAGGGGGGACACAACATGCT 15742 29 96.6 32 ............................T TCTGCCGTATTTCTATGTACTCTCAGGCGGGG 15803 29 100.0 32 ............................. GTCTTGCGGGCGCTGGAGCGCTCGGAGGCAAA 15864 29 100.0 32 ............................. GCGATAGACCGTCTCGGCTTGGACGTGGCGAC 15925 29 100.0 32 ............................. TACTGGCCCGCGCGGATTACGTCCTGCGCGGG 15986 29 100.0 32 ............................. GAGCTGCGCAACTGTAGCGTCAGCGTCCTGCC 16047 29 100.0 32 ............................. AGAGTGCCAGCTTTGACGAGGATGGTTGGTCA 16108 29 100.0 32 ............................. GCGGGGGCGGGGGCGTCAGTCGGTCAGGGGTT 16169 29 100.0 32 ............................. TAGACGAACGCCTGACCGAAATCCCCGGTTGC 16230 29 100.0 32 ............................. TAGATCCATTGAAGTAAATCCAGCTAGCAAGC 16291 29 100.0 32 ............................. TGCCTGGAGGAGTGGGGCGAGGTCCGTTTCGG 16352 29 100.0 32 ............................. TAGCTGGCGAGGCCATCCGGGCGAGGCGCCAG 16413 29 100.0 32 ............................. CGCCTGCCACGGCGCGGTTCACGCTGTACGCC 16474 29 100.0 32 ............................. GGCAGCCGGTGGCGCTGGCGTGGTTCAGCCCG 16535 29 100.0 32 ............................. TGGTCCCTGCACAGCGTCACGATCATGGATGC 16596 29 100.0 32 ............................. GGTGGGGGTGAGTGACGGGGGTGAAGCGACGG 16657 29 100.0 32 ............................. ACCGTGCGCCGACTGCGGAACGCCATGCACGC 16718 29 100.0 32 ............................. CACCTGCCGATCACGTACATGGACGCCACCGA 16779 29 96.6 32 ....................A........ TTGAGTCAACCATTGGCCGTTCGTAGCGTGCC 16840 29 96.6 32 ............................A TCTCATGCGGAACATCGGATGATCGGACCCCG 16901 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.7 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : CACGAACGCCGCGACAGACGACCTGGCCGCCGAAACCCCCCACTTCGGCACCCGCCTGGGCGACGACAGCCTCCGCATTGTCCCCATTCACCGGAACGGCGCTGACTACCTCGACCCGAAAGGCACCACCGCCGCGCAGATCGAAACCCTTCAGAAAAGCGACTGGGACACCGCCCGTGCTATCTATCGCCGCAGCCTCCAGGTGTCCCGCCATGACCTCGTCAGGCACTACCGCGACCACCCCACCCGCCGGGGTACGGAACACACCGGCTGGGCTGCCCACCCACTCCTGCGCGACGCCGAACCCCTCATCCTGACCGGCAATCAGACGGTCATCGGCAAGACCCGCGTGGCCCTCGACCCCGAACTCGGCCTCACCTACGAACGCATAGAATGACCGCAGGCACCCGCCCGCGCCACATGAAAATGTAAGCTGAGACTGAGGGGAGAGAGGAGACCTCCCACCCCCTTTACTCCCCCGGAGTGCGTGTTCCTGAAGT # Right flank : GCACCTTTGAGGTGCGTCCCTCTCTCGCCATCAGGCGAGCGGGGGTCGCCGCGCGGCGTCCTGGAAGGCGAGTTCCGCGTTGATCGCGGCGGCTGCGCGGGCGCCGCTGGCGGCTGCCAGGACGACTTGCTGCTCGCCGATCATGTCGCCCGCCGCGTATACGCCCGGCACGCTGGTCAGCCCGCTTTCCGGCGTGACTTTCAACAGGACGCCCGCCAGGGTGCCGCGCTCGATGCGGGCGCAGTCGAGTTGCTCGGGAATCGTGGAGCGTTGCGCCTGCCCGGGCGTGACGAACAGCGCGTCGCGTTCCATCGACGTGCCGTCCTGGAAGGTGACGTGCCGGCCGTCCCAGCTGGTGACGGGCCGCTCGTCGATGCGGACGCCCAGGTGCGCGAGATTGGCGCGCTGGTCGGCGCTCAGGTGATCGGGGCCGTGCGTGAGGAGGGTCAGGTGCGGCGTCCACTGCCGGAGCAGGACGCCGCGGTGGTAGGCCATGTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9771-8478 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNAM01000021.1 Deinococcus indicus strain CGMCC 1.18440 sequence21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================================================================================================================================================== ================== 9770 35 100.0 37 ................................... GCCTTCAGGAACGTACTGCACGGAACCGGGAGTCACT 9698 35 100.0 33 ................................... ATGTTCAATGACTCCTAACACGCAAACCACGAG 9630 35 100.0 35 ................................... CCGCCACGGTGCCGTGAGCCGGTCCCGGAGATCGA 9560 35 97.1 36 ......A............................ TTATCCAATATGTACGAGAGTGGGTGTGAATTACTT 9489 35 100.0 37 ................................... AAGCTTTCGTCATCCAGCAGCGTGCCATAAGGCTCAC 9417 35 100.0 34 ................................... ACTAGGCCGTGTTCGACGTATGAACCCTTGCGGG 9348 35 100.0 34 ................................... GTCAGGTAGCGGTCAGTGGTCATGGTGTCCCTCC 9279 35 100.0 34 ................................... GTATGCCCAGTACGACTATCACTAAGAACATCAC 9210 35 100.0 40 ................................... CCGCCCCTTGCCCACTCACTGCACCATGCCGGGTCCACCA 9135 35 100.0 34 ................................... CATATAGCTCACGAGTAGCGAAACCATTAGGTAC 9066 35 97.1 35 ........................A.......... CGTCTTATAGCGTCCCGGTTCACCGTCCACAACCA 8996 35 100.0 36 ................................... CTTTTGTGCATGGCCCAAAGGTATCTGACCATGCTT 8925 35 100.0 33 ................................... ACCAGAATCCCCCTTTTTCCACGTTCAGGTATT 8857 35 97.1 35 ......................G............ TACTTGGCGAAGTGACTAACCCACTTGTTACTCAG 8787 35 100.0 35 ................................... CCCTGCGCGCGCCTGATGGAGTTGATCTGTGGGTC 8717 35 97.1 170 .........G......................... TACTTGCGGGCGACGACGAAGTGCAGGGCGGGGTGTCTCATGCGGACTCGGCTTGAATGGGCTTTGCAACCCATTCAAGCCGAGCGAAGCGAGTGGGAGCACCACGGGTTCTGGACGTGGAGCCGGCAATCCGGTGAAGTTCCGGGTTGTTGGCGAAACAAACGGAATCC 8512 35 74.3 0 ..A.....GG.A........GC.........C.GT | ========== ====== ====== ====== =================================== ========================================================================================================================================================================== ================== 17 35 97.8 44 GTCTCAGCATTGCTTCCCTGATAAGGGATTGAAAC # Left flank : GGTGGGCCGCAACGGGTCCACCTCTGCCAGCGGGTACCGCGAGGACGCTACGCGGTAGGAGTCCTCCTCGCCCAGACGCTGGAACATCACATCCAACCCCCGGACCTGACCACCCCGAATGTGTCGGAGCAGCGCCTGCAATTCCTGTTCCATCGTCCACCTTTAAGCCCCGTGAAGTTGTTGTTGCGGTCAGGGTACATGGCCGACCCACGGAGGGCCTCCACAGTTGCGGTATGGCCGCAACCCCCGCAAAGCGGAACCCAGGCCACCCGCAACGGAACGAAAATGAAGATTATGCAGATGAGAGACAAAAAGCGCATGTCAAACGAGGAAAGACACTATGCGTTCAGGCCATTTTCTCATTTTCGTCCCGCAGCCGTACCAGTCGACGAAAACAGAAGTCCCCATCTCTCATAAACCGAAAATGAATGCATACTCATGACTCACTTACAGTTCACATGCTAGAAAGACCGTGCTGCACGGCCCCGCCGGACAGCAGA # Right flank : TCGGTAATCCCGCCCCGCTGGTCCTCGCGTGCCTGGGCCAGCGTGCGGAGTTCTGGTCGCTCTGCGTTCGTTTCCGCTTTCCGTGCCGCCCGGTCACACGGGGGTATGACATCTGTTGTGGTTCAGACGCCAGGGGCGGCCATCAGTGCGCGGGGTGGGCAGTTGATCGTGGAGACGAAAGCAGGGCAGCACGCGGTGCCGCTGGGGCACGTGACCGAGTTGATTGTGGTGGGGAACGCGCGGATCAGTACGGCGGTGATCGTGGATCTGGCGGGTCGGGGCGTGCCGGTGCATGTGCAGGCGCAGGCGGGGTCCGTGCCGTTCAGTGTGCTGGGGAACGTGGAAGGTCAGGTGGAGGCGTTGCGGGCGCAGGTGCTGGCCCCTGCCGGGGCGCGGCTGCGGGCGGCGCGGGCGTTAGTGCGGGCAAAGGTGGTGAACAGTGCGTGGGTGCTGCGCCGCCTGCGGTGTGGGGTGCTGGACGTGCCAGACATCGAGGCCGC # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:-0.80, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGCATTGCTTCCCTGATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 20321-20929 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNAM01000021.1 Deinococcus indicus strain CGMCC 1.18440 sequence21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 20321 35 100.0 38 ................................... CTATCGAAAGTGCTGTTGATATCGTTCTCCATCATGTC 20394 35 100.0 36 ................................... AGCCAGAAATGCGTCAGATGCTCCATTACTTCTCTC 20465 35 94.3 38 T.T................................ ATCTCCGCGATGAGGTCCTTATCTGCCTGCGTGTTGAT 20538 35 100.0 38 ................................... ATCACCGTCATAGTATGGATATCAAATTCCTTTAAGGA 20611 35 97.1 36 ........................A.......... TAACATTTATTCCCACCTCCAGCTAAACCATAACCC 20682 35 97.1 38 .................T................. ACCTCGTTCTGCACGGCAGCAGCGGCGACGCGGGCGCA 20755 35 100.0 35 ................................... GCGCGTTTAAGTGCGAGTTTGAGCGCATCGTTCAG 20825 35 97.1 35 .C................................. GCCATGTCGTCGGCAATTGCGTCGTTTGCGGCTGC 20895 35 88.6 0 ...........G..C...............A...A | ========== ====== ====== ====== =================================== ====================================== ================== 9 35 97.1 37 GTCCCAGCAGTACTTCCCTGATAAGGGATTGAAAC # Left flank : GTGGTGGTGCTGGACAATGCCGCGATTCACCGGGCGAAGGCCGTCTCGGCCTTCGTGGCGACGCAGGATCGGCTCTCGCTGGTGTACCTGCCACCGTATTCACCGGAGTTCAATCCGATTGAGAAGGTCTGGGCCTACGTGAAGCGGAACGTCTTGGGAAATTTCTGCGCCAGGACGACAAAGGAACTGAGGAAACGGCTGCGTGCGGGCTGGCAGAGGATTCGGTATATCCAGTTGCCGCAGCACCTCATGACAGCAACTTCAATTTAAACCGTTATCAAGAAAATGAAGGTTATGCAGATGAGAGGAGAGAAGTCTCTGTCAGACGATAAAAATTTGTATACACCGGCCTCTATTTCTCATTTTCGTCCCGCAGCCGTTCTGGTCGACAAAAAATAGGCGTGGCGTCTCTCATAAAACGGAAATGAATGCATACTCATGACGCGCTTACAGTTCACATGCTAGAAAGGCCGTGCTGCACGTTTCCGCCAGACAGTAGA # Right flank : ACCGCCCCCGCCTACTTACAGGTGGGGGCGGTTTTACGGACTGTCTGTCGGTGTTACAGGGCGTCGCTGGGTCGGCGCAGCAGGCGCAGCACACTGACGATGGTCACGGTCTCGTTGGGTGTCAGGGCGGCCTGCGCGGCGTGCAGGTGCGGGTGGTCGTGGGTCCACAGGGGGTGGCTGACCAGCACGGTGCGGGGGCCGTGGCGGGTGGTGGCCTGGAAGGCGGGCACGTGCGGGTGCAGAGTCGTGGGTGCGTAGCCCAGCTGGGTCAGCGCGGCGGGAATGGGGGCGTGGGGGCCGCTGACCAGGGGGGTCCAGGGGTTGGGGTGCTGGCCGTGCGGGGTGTGCAGGTCGGGCGTGGTCAGGTCGCCGCTCAGCAGGCGGGTCAGGTCCAGCGCGAGGCGCCAGTCCAGCAGGGGGTGGTAGGCGGCGTTGCTGTAGTCGCGCAGGCAGCGGGCGCAGCTGCCGTCGCAGTCGGGGGCGTGCGCGTGCCAGTGCGG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCAGCAGTACTTCCCTGATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 29705-29467 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNAM01000021.1 Deinococcus indicus strain CGMCC 1.18440 sequence21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================== ================== 29704 23 95.7 50 .................C..... ATTGCAACCCGTTCAGGGCAGCCTTGACCCGCGTAATGAGGTCCTCGTCA 29631 23 100.0 49 ....................... ATTGAAACACGCCGTACACGGCGTCAGCAATGGCGAGGTACAGGGAGCT 29559 23 100.0 47 ....................... ATTGAAACAGGTCAAGGAGCTTGGCCCGCTCATTCTTGAGGCGGTTC 29489 23 95.7 0 ......C................ | ========== ====== ====== ====== ======================= ================================================== ================== 4 23 97.8 49 CAGCAGTACTTCCCTGATAAGGG # Left flank : GCTGGCCGCGTAGCCACGCGCCACGACGTCACCCACCTTCACGCCCCACCCACCACTCCACAGGAGACCCCATGAACGACTTCGACCTGTTCGACGACACCTGCCCGGATTGCAGCGGCACCGGCTACGACGACGGCCAGTGCCACACCTGCGGCGGCACCGGCAGCCCCCTGCACCCCACCCCCCGCCCCCACCACGGCGAGTGGGCCTGGCTGGACGATCTGGACGACACCCAGGAGCAGGAATGAGCAGAATGGGGGTGACCAACGCACGGGACGAAAATAAAGATTATGCAGATGAGGGGCGCAAATATCATCTGGCACGACAAAAATAAGTATGCGCAAGCCGTCGTTTCTCATTTTCGTCCCGCATCCGTTCTGACCGGCAAAAAAAGGGCTTAGCGACTCTCATAAACCGAAAGTGAATGCATACTCACGACACACTTACAGTTCACATGCTAGAAAGACCGTGCTGCACGGCCCCGCCGGACAGTAGAGTCT # Right flank : TCTCTTGTCCCCCTCCCGCCGTGAGGGGGGTTTTTCGTTCCGCTTTGCCGGTCTTCTGGCCATATCTGGGGTATGCCTTCGTATTACGACTGGAATACCGCCCTGATCGAGCATGTCACTCACGGTGCGCCGCTGGGCAGCACGGTGTACCTGGAGGTCAGTGAGGACACGCTGGAGCGCGTGGGTGTGCAGCGGTGGGGCGTGCCGGGGGACGGGGCGACGTGGGCCGGGGATTTTCTGGCGGCGGTGCAGGAGAGCGCGGTGCGGGCCGGGCGGGTGGACGTGTCGTGGATGCACAGCGGGGATCCGCAGGGGTGGCCGCTGTGCGTGGCGTTTCTGGGGGCCATGGTGCTGGCGGCCTCGCAGATGCAGACGGACGTGGCGGCGGCCGTGCATGAACGCAATTACTTCCGGCGGTTGGGTGGTGTGCTGGGGGTGGGTGTGGGGTCGCAGGGTCGACCGCCCGGGCTTCAGGTGGGTGAGGAGGAGCCTCTGTGGGC # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCAGTACTTCCCTGATAAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 35244-35758 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNAM01000021.1 Deinococcus indicus strain CGMCC 1.18440 sequence21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 35244 34 100.0 35 .................................. TTCCGGGATGTAGACCATCTTCTTCGGCCGAATAT 35313 34 100.0 35 .................................. GTCGCGCAGCGAGCACTCTGCTCCCAGACGGCGGC 35382 34 100.0 35 .................................. TCTCGGCGCTCTTGGGGAGCTTTCCGGCTTCAAAG 35451 34 100.0 35 .................................. TATTCGCTGACGACGTCGCTGGCGCGAATCAAGAT 35520 34 100.0 34 .................................. AAGCCCGTTTACCAGGGTGACTCAGAAACCGAAG 35588 34 100.0 34 .................................. CGCTTGGCGGCCCCGATCTTCGCGACGTTCTTCA 35656 34 97.1 35 .................................A GGTATTCCGGCGTCCAGCACGTTTTTTGGATAGGT 35725 34 85.3 0 ...T.....GT.......A...G........... | ========== ====== ====== ====== ================================== =================================== ================== 8 34 97.8 35 CCTCCAATGACCTTCCCTGCTAAGGGATTGAAAC # Left flank : GCCGACCAGGGTAGGTCAGCCTGAAAGCGACTGCGGGAAAGTAAGGACGCTGCTCTGGACGCACAAAAGGGCATGTTGCCCGGAGAACGGTTTACAGTTGATTGCAATCATGAAGGGTTTCTGAAGAAACAAGAGCGAAAAGAGGCTCCAAAAGGCAAAATAGAGAAAAAGGCGCTGGGAGCGGGAAAACGCGAGGTCTGAGGAAGACATTGATGCTCGTATGCTCAACACTTCTGAGCTCAGGGAGTCTTTATGAAGTTCCCAAATCTGCATAGTGGTCATTTTCTATGCAGAGAATCGCGTTTTTCCTGTCCTGGAGGGATTCTGACAAAAACCAAATGTACGATGAATCACTTTCCGTCAAAATATTGTGCAGAACGGCGAAAGCGTGGTACGCTGAAAGCGCGAAAGACATTATTCATGCTATGCAATGAATAATTCATCCTGAGCGAGTTATGAGTGCCTAAAAGCACGTGCTGCACGATAACGAAAAAAGAGCC # Right flank : CTAAGCAGTGTTAGTGTGAAATGGCGTTCCTGAAATCCGGGGTACGCAGGTCCTCAATCCCGTTCAGGGGCACCTTGTTGGCCTTTCGGTAAGGGAGGCCGTAAAACGTCGTCTGGGACGCATCAAAACGACAGAAACCGATTGCTTGGACTGAGATTTGGGAGGATCCCATATCCCAATTACCCCCTTTCTTTTTATTCGGGAGTATATGAGTGTTCATCACACCGCTCCTATTCCGCTCATGCTCCTGCCTAAGCCTGGGTAGGGGGAGATTCGAATGAGATCGCAGGGACGCTCTTTCATCCGTGCTGATGAACAACGGTCAAATCAGGAGCCTTCTGAATCCCCCCTGTTTGCCATATATGGCGCAATATATTGAGATCCCTACCAGTACTTCCTTCTCCTCAGCGCACCGGGCGGTAAGCGACGGCATCCTCACCCAGTTGCACGATGTTGCCCGTTCCCGGTTCCAGCAGCGGCGTACTACTCCGCCGCGTCGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCCAATGACCTTCCCTGCTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //