Array 1 40983-39384 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIA01000007.1 Lottiidibacillus patelloidae strain SA5d-4 NODE_7_length_169803_cov_115.464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 40982 36 100.0 42 .................................... AATAATCGTTGCTATAATCGTTGCCATAATCATAACTCCTTT 40904 36 100.0 38 .................................... TTTCCAAAAAAATGCATTCATCGTTTTCATCCAACAAC 40830 36 100.0 40 .................................... GGTTCATTAAGACGCCAAGCGCCTTGTATACGCGAGTTCC 40754 36 100.0 36 .................................... ATCGTACGATGGCCAATATCCGCTTTCTACTCCGTC 40682 36 100.0 39 .................................... TTCGACGTAGAAACTTCTCCCTTTTACTTTTACTTGGAT 40607 36 100.0 37 .................................... ATTATCAATCCGAATAAACACTTCATAATGGTTAAAT 40534 36 100.0 37 .................................... ACGTTCCGCCTTCTGTGATAAACGTTGGTCTCTGACC 40461 36 100.0 39 .................................... ACCGTTAACCCTCCGAATAGTACAGAGTACAGTGCCGTC 40386 36 100.0 35 .................................... ATTATAGACACACCTTTATCAGTTGAGGAAATGAA 40315 36 100.0 38 .................................... ATTTATAAACTTTCGTACTCTCAAGTGCATAAGACTGT 40241 36 100.0 39 .................................... ACGACGAACCAGTACCCAGGGTACTGTCTTTTATACCAC 40166 36 100.0 39 .................................... ACTTCAATATTTTTTCCTTGCAATTTTTCACTCTTTTCT 40091 36 100.0 42 .................................... TTGCCCTCACGAGCAAGTTGGACAACAGCGTGGAGGTATTTT 40013 36 100.0 38 .................................... ACTTCAACGAGTGCAAAAGGTGAGAGTTTGCTGCAATT 39939 36 100.0 40 .................................... GCCGTAATGCCCCACTTACTTGTTTTGACGTCATAAACGA 39863 36 100.0 36 .................................... GAGCCTCCGCCTCCATAACTAGACGGCTTTTTATCT 39791 36 100.0 40 .................................... CTTCTTGTGTAAGAGCTGTGATTGTTTCTCCGTCAAAGTT 39715 36 100.0 39 .................................... ATCTCTTGATACGCCTTGTGCTTTGTGCACGTGGTATCT 39640 36 100.0 36 .................................... ACTTGGAGATAGCAATGTTACTTTTCTTTTACCTTC 39568 36 100.0 41 .................................... ATGACATCGTCGTGTCTGTCATCACGAAATCGAAACGTGAC 39491 36 100.0 36 .................................... GTATTGGGCGTTTTCTTTTGTATCTCCGCCCTTGAT 39419 36 86.1 0 ...........................A..AG..TT | ========== ====== ====== ====== ==================================== ========================================== ================== 22 36 99.4 38 GTAGAAATGAACATGACTCGTCCAGAGTATTAACAC # Left flank : GACATTTGTGAATCTAAGAAAAGAACAAAATTGGCAAAAAAACTTAAGGATTTTGGTGTTAGAGTACAGAAAAGCGTATTTGAGGCGTTTTTAACGGAAGATAAATACAAAGAAATGGTAGAATTAGTTTCACCTTTTGCAACTGAAAATGATTCTATTAGGATATATCCTCTCACGAATTCCAGCTATAATAGTAAGACTATTGTTGGAAACCAATACAATTATTTGCCATTAAAGGACATAATAATATAGAAGCAGCCCATTGTTAATATTTACATGGTGAAAAAAAAGCCCATTTTAGGGGTGTACCATGTAATTAGAAAAAGAGAAAAATGACGGCATTTTATGGTAGAAAACAGTAGAATCATGTCGAAAATGAACGAAATATGCATGTTGCAGAATTTTAGTTTACATAATATATTTTTGCGAAATAAAAAAATTCTGCACCATGTAATTTAGGACTTGAAAGCCTTGGGACAGTAAGGTAAAATATGGGTACA # Right flank : GAAAAAATGAAAAAACAGCCACTGCGGCTGTTTTTTTCATTGTTCCTCTAATACCACTCTCAACTTATTCCTCGCACTGCATTCTATCAACTTTCCTTATTAACACTAATATCAATATGTTTAAACTTTGTAACATCAAATAATCCTTTATCAGTTAATTTTAAATGGGGAATAACAGGCAAAGCTAGAAATGAAAGGGTTAAAAATGGATTAAATGTTGGATTTGCTTCTAATAAAGACAGTGCTTCGTGGATTTTGTTTAGCTTTTCATTTATGACTTCGTAAGGTTCATTCGACATAAGTCCTGCGATAGGTAAAGCTAATGAAGCTAATATTTCTCCGCCTTTTACTACAACTAGCCCTCCTTGTATCCGCTCGATTTCATCTGCGGCAAGAAGCATATCTTTATCGTTTGTTCCTGCAATGATTAAGTTGTGAGAATCATGAGCGATCGTTGTCGCTAAAGCCCCGCTTTTTAGTTGTAGTCCTTTAACTATGCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAACATGACTCGTCCAGAGTATTAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 65697-64922 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIA01000007.1 Lottiidibacillus patelloidae strain SA5d-4 NODE_7_length_169803_cov_115.464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 65696 37 97.3 35 ....................................C TATAAAGAAACCTTTTAAGATGACCTCGTTTTGTT 65624 37 97.3 35 ....................................T TTAACTTTAACTCTTTGTCACCAGATATCCACATT 65552 37 100.0 39 ..................................... CAGTTGCACTAATTCATTTTCAAATCGTCTTTCTTCCAC 65476 37 100.0 38 ..................................... TCTTCTTCCATCAAAGCACGAATCGCAGATGTAGCGTT 65401 37 100.0 38 ..................................... TCATAAAGAATTTTGTAGACATTTCTGCCTACTTTATT 65326 37 100.0 34 ..................................... CCTTTCGTCACGACGGGTAAAACTTCCAAGTAAG 65255 37 100.0 38 ..................................... TTTTTGTGTATATTTCTATGTTGCTTTTTCCTTTTGTA 65180 37 100.0 37 ..................................... CATAACCAAGCTGCGCTAATTTTTTCTTTGCGCTCGG 65106 37 100.0 35 ..................................... CGACGATGCGGATATAATCATCCGCTAGCTCGTCT 65034 37 100.0 36 ..................................... CCACGTTTTTCTATGTAATAGTTTCCATCTACTTTT 64961 37 100.0 0 ..................................... | CTT [64926] ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 99.5 37 GTAGAAATGAACATGACTCGTCCAGAGTATTAACACA # Left flank : TGGTAATGACGCAGACACAACTGGAGCGGTCTATGGGCAAATTGCTGGAGCTTATTATGGGGTTGGTGGAATTCCAAAAGAGTGGCGAGAGAAAATTGTGCTGAAAGATAAAATTAGAGATTATAGTGTTCTGTTATATGAAATGGTGGAGAAGAGCTGAGTTCTGGTGAAACTTAGTAATTAGAAACCATTGAAAAACATATACTAATGGGGATAAAATTCTTTAAATTTTAAGTGAACGTTGCACTATTAACTCGTAGTTGGTTTATTTTGTGTATGGTTAAAAAAACGGGTAAAATTGCAGGTTACCATGTAATGAGACATTTGCTATAAATAGAGCACTATTGTGTCGATTTCTGTCTAATAAACCCGAAAAGTGTAGTATTTTGAAAGGTTGCTAATTTTAGTTTACATAATATATTTTTGAAAAACAGAAAAAATCTGCACCATGTAATTTGGCTCTTGAAAGCCTTGGGATAGTAAGGTAAAATTTGGGTACA # Right flank : TTATAAATCCCCTTAATAATTCATATTTAGGTACTATCACTTTAAAATCCACCCTATTTTCTAAAATTCAAATAAATTGTTAAAATTGGCATAATTTTCTTGTTTTCGTCAAATTAAAGGCATATAATAATTGTAATAATATTTTGAATATTTAAATTAGTGAATATCTAATCGGTGGAAGAAGGAAGGTAGCATATGTCTATTGGATTTATACAGGGCAATATTAATGACAAGATGGATCGAATTAAGAAGCTTTATGAAAAATTAAAAAGCTTTTCAGTAGTAGAACCACAAATTTCATTAATACTAGCTAGAAGAATTGCAGAGGATATTTGTAGAGATTTATTTAGCAGATCTATCTATAACAATCCAGGAGATATTACTCTTGAACCATTAATTGATACACTACTTGATGATGATGTTATTCCAAGAGTAATTGCCATACATTTAAATGCCATTCAAATCTTGAGCGATGATCTTGATGACTTTGAGGAATATGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAACATGACTCGTCCAGAGTATTAACACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 94818-94409 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIA01000006.1 Lottiidibacillus patelloidae strain SA5d-4 NODE_6_length_229903_cov_157.979, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 94817 36 100.0 39 .................................... CGTTTTTAGTAGCGGCAAGAAAATCCATCTAAATAAAAG 94742 36 100.0 37 .................................... ACTTTCGATGTCTTCGACATTTTCAAACTCTGAGAAG 94669 36 100.0 35 .................................... CCCATATAGGGGATGCTAACATCTACCTTTACGAT 94598 36 100.0 42 .................................... ATACTTTTTATCTCCAAACATTGCATGCAACGATTTATAGTC 94520 36 100.0 40 .................................... ACAGAAGAAAAAGTCTTTTTTCCTTCGATCTCAATTTCTT 94444 36 97.2 0 ................................G... | ========== ====== ====== ====== ==================================== ========================================== ================== 6 36 99.5 39 GTAGAAATGAACTTGACTCGTCCAGAGTATTAACAC # Left flank : CTATTACTAATAACAAGTACAAATACCTCACACCTCCACTTTTTTACTACTTGCATCTTTAACATCAATTGGTCATTTTATTCCTTTTTTCAGAATTTTAAATACTTAAGAGGTAATGCACATTATTTTTTCCCTACAAATTTTGAGTGACAGGCAACTATACGAGAATCTTTATATGTAACTGAGCGCATAACCAAAACAAAACTTCTTAGTAATACATAAAAGTTTTAGGACATATTAATATAGAAGGAATGAAAATAGACCTTGAAATAATACATGGTAGAAAATTACCTCATTTTAAGAGTTAGCATGTATTTCGACATTTGGCAGAAATAGCGTAGTATTTGGTCGAATTTCTGTCGAAGGAGCGCGAAATGCGAAGAATTTTGGAAGGTGGAAAATTTTAGTTTACATAATATATTTTTAGAAAACGGAAAAAATCGGCACCATGTAATTTTGCTCTTGAAAGCCTTGGGGCAGTAAGGTAAAATATGGGTACA # Right flank : CATACTTCGGTGTCCAAAAGTCCCTAAAATAGTTAGATGTTAGTTTTAGACACAAAATAAACCCAGCTTAAACTCTTTTTTAAAAGAGTTTAAGCTGGGTTTTTGGTTCGTCATCATCTCTGGAAAGTGACAACCTCCCTTTTAGAGCAAAGACATCTGCTCTACTTCTTTCGCTTTGAATACAGCCTTTTCTAGTTTCTCATCTTTTTCTAGTGTTGCATCTTCTTTTATTTGCTGCTCCAGTTTAAGGTATTCACTAGTCCCAAAGACGTTTTGCCTTATTTTAATCATGTAAATGAGATTGAAACAGTTTAGAATTGAGTTTTGCTTCAAGTCAGTTAAACAAATTAGTTGGGTATTGTATTTGCTTGCAATATTAAATAATGGCTTTAATAAATGCTCTGATGAAATTGGTCCAAATGGGTTGTCCATGATTAACACTTTTGTATCGGTATTTCGATCATAATCATCTACGTACTTCATGCTAGTTCGAGTATATG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAACTTGACTCGTCCAGAGTATTAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.70,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 99786-98713 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIA01000006.1 Lottiidibacillus patelloidae strain SA5d-4 NODE_6_length_229903_cov_157.979, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 99785 36 100.0 37 .................................... ATAGTTGGACGTGAATTCGTTAATATTGGAGTTTAAA 99712 36 100.0 35 .................................... TAAGATACTTGCGTATCCTAATAAAACTGCCCATT 99641 36 100.0 41 .................................... ATTTTTTTCAATTCCATTAAAATCGCCACCTTATATTATTT 99564 36 100.0 41 .................................... ATCTTGTTTTTGGATGTCTATTTCTGAGATTGCTATTTCAA 99487 36 100.0 35 .................................... ACAAACGTCCCAGAGGTCTTGGAGTCCACTTTGCC 99416 36 100.0 41 .................................... ACCTTACGCTCTACAACGTCGATGATAATAGGGACAGAGAC 99339 36 100.0 38 .................................... ACCATGCTTATCATTTAGATGCTTCAAAAAGTTAGCAT 99265 36 100.0 39 .................................... ACCGTTCAAATATGTAGTAACGTCTTTAAATTCATTTTC 99190 36 100.0 37 .................................... ATTCAGACGCCGTATATAAAATCTCCGAACTAGATAC 99117 36 100.0 40 .................................... TTCCATTCTGTGTCCTTTTCAGTCACAAACAGAAGTACGT 99041 36 100.0 35 .................................... ATTTACTGCTGGGCAACAGTTTGAAGATGTTCTTT 98970 36 100.0 37 .................................... GCTCCTGCTTCTTCATGCCCAATATCTTGAAGTTGAT 98897 36 91.7 41 ...........CT........A.............. GAAAACTTTTTTGGGCTAGTTGATACTTCTGCCATCATTTC 98820 36 91.7 36 ...........CT........A.............. CACTTAATACCTTTCACTGCATGTGGTTTTGCCCAC 98748 36 86.1 0 ...........CT........A........A...G. | ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 98.0 38 GTAGAAATGAATATGACTCGTCCAGAGTATTAACAC # Left flank : TCCTCTAATCGGTGGTATTATTTTATTATTCTTCTTATGTGAAGATAGTAAAGACGCAAACCAATTTGGTCCTAATCCGAAAGCTGCTTAAATCTACAGTTAATTCTCAAGTTATAAGCCGCATCTTGCATGGAAATGCAAAGTGTGGCTTTTTTCATGGTGACAGGCACCACTTCCGGGAACTGAGCGCATGACCAATACAAAATTCTTAGTAATACATAAAAATATAAGGGCATATTAATATAGAAGAAATGGAACTAGTTCTTGAAGTGCTACATGGTGGAAAATTGCCTCATTTTAAGCCTTAGCATGTAATTCGACATTTGCCTGAAATAGCGTAGTATTTAGTCGAATTTCTGTCGAAGCGGCATGAAAAGTGTAGTATTTTGCCAGGTCGAAAATTTTAGTTTACATAATATATTTTTGAAAAACATAAAAAATCCGCACCATGTAATTAGGCTCTTGAAAGCCTTGGGGCAGTAAGGTAAAATATGGGTACA # Right flank : TTTGAATTTTCAGATTTACTCTCTTTTAGTTCTCAGCACACACCAAAAAATCCAGCTCACACTCTTATTTGCAAGAGTACGAGTTGGATTTTTTTCTCTTCATTTTCGTTTGGAGTAACTTTCAAAATTCCCGTTCAACAAAAATCGGGTAGTGACAGGCAATAAAAACTTTTTTCACCGTAGGCAGCTTTCCTACACCCCAAAAATAAACTGTTCATGTAAAAACTTAAAGGAGCTGATTTTATTGTCATTTAATATCTTTAATCCTACAGTACCGAATTATTCAGGAGGTATTAATAGCTATGACCGAAGCTTGCGGACATATATTGACCAATACGTGGAGGTGGTAATATGTGGGTGACTAATCATTTAATCCGTTTCAATAACAATGGAACACTTTTTATTAACGAACGTACATTGCAACACATTAATAAACAGTTTAATACTCAATTTGCTTCAAATTTAGGTATAGATGTTTGTAACTCTATCATTATGGATGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAATATGACTCGTCCAGAGTATTAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 111221-110666 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIA01000006.1 Lottiidibacillus patelloidae strain SA5d-4 NODE_6_length_229903_cov_157.979, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 111220 36 100.0 39 .................................... ATCGTATTCATGTGAACCCCTCCGAAATTTTTATTTGAT 111145 36 100.0 36 .................................... AATGAAACATGAAATCATCTCCTTTTTTTGGGTTTA 111073 36 97.2 38 .....T.............................. CGCCTAACACTTCTGCTAAAGCAGCGTCATAGCGTTTT 110999 36 100.0 36 .................................... TTTAATACAACACGACTTTTTTTCTTCATCGCTTGT 110927 36 97.2 38 .........T.......................... ACCTTCGTCAAGAGTCATTCCCGATGTAGTTTGATAAG 110853 36 97.2 43 .........T.......................... GCGTTCTTTTTAGAACTACCTTCTTCGACCGTGCGGTACCCAA 110774 36 97.2 38 .....................A.............. ACTAACTGGAAGATCGCTTGGATTCCTTGGTTATTCAT 110700 35 88.9 0 ...................-...........TT..T | ========== ====== ====== ====== ==================================== =========================================== ================== 8 36 97.2 38 GTAGAAATGAACTTGACTCGTCCAGAGTATTAACAC # Left flank : CAATAATTCCTTTTAACCGTTCACTTGTTAGTGCATTTTTGTATGTATCCCAAGATTCTCTTACTAACTCATCTAACTTTAACTTAATTCTATCCTCCATAAATTCTCCTTCCATAACTTTATTACTAGTAACTTCTATTTACATATGTTTGTCTTGTTTCATTTATACCTTTAGCCTAGTAAAAACGTTATATAAGGGCTAGATACCACTAAAATGCAACATTTTTTCATCTATGGACACATTAATATTGAAGGAATTGAATATAAATGGATTACATGGTGGAAAATTGCTTCATTTTAAGCCTTAGCATGTAATTTGACATTTGCTAAAAGTAGGGTAGTTTTTGGTCGAATTCTTGTCGAAGCGGCACGAAATGTGAGGAATTTTGAAAGGTGAAAAAATTTAGTTTACATAATATTTTTTTGAAAAACGGAAAAAATCCGCACCATGTAATTTGGCTCTTGAAAGCCTTGGGGCAGTAAGGTAAAATATGGGTACA # Right flank : CTACGCTTATACAAAAACAAAACCAGCGCAAACTTAGATGTTTGTGCTGGTTTTTTGATTTGATTAAATCCGGAAAGTAACTGGCATTAAAGGCTATATTATTTATCCTTTCCCCGTGGAATTTGCCCGAATAAGTGCTGGTCTTTAATTACTTTCGTTGGTTTTTCACCTGCAGTAAGGCAATCTAAATATTTCATGTGCAGATATAAACTATTCCTATTACGATCCTGCCATATATGAGAATTTTCTTGCAGCATACTTTCTGTAAAACTTTTACCAGCTTCACTTTTCGCCTTAAAGTTATTTTGAACCATATACATTCTATATTCGGGCATACTTTTTAAACAAATTGCATTTTCCTCTTCACTCCATCGTTTCGCCAAATTGTTCAACCCCTTTTAAAAATTTAATTTCTAATACATTTCTAATGATACTTCGGGCATGTAGAATCATTTCCTACACCCCTATATACCAACATACTTAAGGGCTTAATATCGGTA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAACTTGACTCGTCCAGAGTATTAACAC # Alternate repeat : GTAGAAATGTACTTGACTCGTCCAGAGTATTAACAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.70,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 114323-113993 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIA01000006.1 Lottiidibacillus patelloidae strain SA5d-4 NODE_6_length_229903_cov_157.979, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 114322 36 100.0 39 .................................... ACATCAAAGTCGCGACGGTGATGTGAAGTACGAATTACA 114247 36 100.0 39 .................................... TCTCCTTTCCGACGCATGTTACGACGTCGGAGTGGAAGA 114172 36 100.0 36 .................................... TTCATCAAAGATATTCACTTTATTGATGATATTTCT 114100 36 100.0 36 .................................... ACCCCTTTGTTATAGAGCAGACTTTTACGGACTAGT 114028 36 86.1 0 ...........CT..................TT..T | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 97.2 38 GTAGAAATGAATATGACTCGTCCAGAGTATTAACAC # Left flank : TTGCAATCTTATCACAACGAAGCTTTCGTTTATTTAGGTGCTGTTGACCAGAACGATCAGCAGTTCTTGACTTTTATAAAAGATAAACTGTTAGAAGCATATGAAATTTATTATTTAGGTAGGTATTAAATTAAGTAGGAAGGCTTGAGATTATTTATGCTCGAGCCTTTTTATAAGTAACTAATTGCCTGCCACAACACTAAACTATTTAGTAATAGTTGTCAGATATAGGACATAATAATAAAGAAAAAGTGAAATTTTTAATAAAAGTATTCCATGGTGGAAAATTACTTCATTTTTAGCCCCAGCATGTAATTCGACATTTGTTAGAAACAGGGTCATTTTTGGTCGAATTTCCGTCGAAGTAGCACGAAATTTGAGGAATTTTGGAAGGTGGAAAATTTTAGTTTACATAATATATTTTTGAAAAACGGAAAAAATCCGCACCATGTAATTTGGCTCTTGAAAGCCTTGGGGCAGTAAGGTAAAATATGGGTACA # Right flank : CTGTGTGATCTATTTCCTTACTTCAAAAAACAAAACCCAGCGCAAACTCTTTAACATAAAAGAGTTTACTCTGGGTTTTTAGTTTGACTAATTCCGAGAAGTGACAGATACCTTAATCAAAAATACTTTGAAATCTTATTTGATCCTCTAACTCTTCAAGTTGTTCCTCGGTAAATTTCGGCTCAATTCCTTTATGCCGTTTGTCCAAATGATCAATCATTGTTGCTAGCCAGCTGATTTCATATACCTTAATAAACTTCGGTGCATTAAGGTCGATTAACTGGTTCGTACGAAGATAACGGTTTTCCGCCATTCTCCATGTATGGAATTTCTCATCAAATTCAGAATCACTTTCATTAATTGAGAGTCTAGACATATAAATACTTTTATTGATTGCATTAAGAGTTGATTGTATATCTTGATTGTCATCTTTTTCTACCATATCAAATTCATTAATAACATTTGCTGAAGTTTTCCTTGTAAATTAATTCTTTTTCGGT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAATATGACTCGTCCAGAGTATTAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //