Array 1 185922-186341 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI518041.1 Rothia aeria F0184 Scaffold213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 185922 36 100.0 28 .................................... GTTTAGGTGCGGGGGTACTCTGTTTTAG 185986 36 100.0 28 .................................... CGGTTGAGCGGGGTAGCCCCGATAATAA 186050 36 100.0 28 .................................... TTCATAACGGCCTGTCCATGATGGAACA 186114 36 100.0 28 .................................... GATAAAGTTGCACGCCCGGCGGCTAAAA 186178 36 100.0 28 .................................... ATAAACCCGTCATTAACAACCGTCTGCA 186242 36 100.0 28 .................................... TAGATTTGAATGGCACAAAGCTGCATAT 186306 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 100.0 28 TAAGTCTATCAAGGTTACAGAATGAAGGTTCCCAAC # Left flank : GTTATTGGTCATGTTTGATCTGCCGGTAAAAACTAAGGGACAGAGAAAATTAGCGAATGGTTACAGGCATTCACTCTTGGATATGGGGTTTGACCGTCTTCAGCTGAGCGTGTATTGCAAGTACTATATGAACGGTAACTCTGCTGGCAAGGATTTGTCTCAGCTGCAGTTTCAAGTTCCGCCAGGTGGGGCGGTACGGATTATGAAGGCTACCGATTCGCAGTGGGCAGCAACTATTAGATATTTAGGTCCTACTCAAGAGACCCCGGAAGAGCCTCCGGGGGCTGTAGATTTCTTTTAGCTCTACAAATAATAGAAATGTGGGGTGTGGGTAACATCATGTTGCCCACACCCCACATTTATGAATTTGCGGGTGGTATATCGAGCCAGTTTTTCTCACATAGGGCCAATAACAGCCTCTTTTGTTGGGGGTATGGCCAGATTTTCCTTCGAAAATCTGGCCATATCTAGCCGCTGACTAGTAGTTATATGCAACGTAC # Right flank : CGGTTGAGCGCTTGATAGCTGAGCTTGAGTAAGTCTATCAAGGTTACAGAATGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGGTTACAGAATGAAGGTTCCCAACGCCAGTCCAGTGTGGCAAACGCCCCACGTAAGTCTATCAAGGTTACAGAATGAAGGTTCCCAACCTGTAGCCGCCCTGGTGGCGGCATTCGGTAAGTCTATCAAGGTTACAGAATGAAGGTTCCCAACGTCGCCGGTGGATATTGCACCGTTGTGCTAAGTCTATCAAGGTTACAGAATGAAGGTTCCCAACCGGCCGGGCAGGCCAATTCGGTGTAACCTAAGTCTATCAAGGTTACAGAATGAAGGTTCCCAACCGGATGATGGTGTCTACCGTCGGCTTTGTAAGTCTATCAAGGTTACAGAATGAAGGTNNN # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGTCTATCAAGGTTACAGAATGAAGGTTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 186782-186553 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI518041.1 Rothia aeria F0184 Scaffold213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================== ================== 186781 37 100.0 27 ..................................... GGTTACACCGAATTGGCCTGCCCGGCC 186717 37 100.0 27 ..................................... GCACAACGGTGCAATATCCACCGGCGA 186653 37 97.3 27 C.................................... CCGAATGCCGCCACCAGGGCGGCTACA 186589 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================== ================== 4 37 99.3 27 GGTTGGGAACCTTCATTCTGTAACCTTGATAGACTTA # Left flank : TAGTAGTTGGGAACCTTCATTCTGTAGCCTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCATTCTGTAGCCTTGATAGACTTACTACACACCACGAAAAGAGATAAATAGAGTTGGGAACCTTCATTCTGTAGCCTTGATAGACTTAATTGTGCGGTTCGGTGCGCATCCTGGATGTTGGGAACCTTCATTCTGTAGCTTTGATAGACTTATCTTCGTGCATGGAGATTTCGGCGCGGCGTTGGGAACCTTCATTCTGTAACCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTTCATTCTGTAACCTTGATAGACTTACAAAGCCGACGGTAGACACCATCATCC # Right flank : CGTGGGGCGTTTGCCACACTGGACTGGCGTTGGGAACCTTCATTCTGTAACCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCATTCTGTAACCTTGATAGACTTACTCAAGCTCAGCTATCAAGCGCTCAACCGTTGGGAACCTTCATTCTGTAACCTTGATAGACTTAATATGCAGCTTTGTGCCATTCAAATCTAGTTGGGAACCTTCATTCTGTAACCTTGATAGACTTATGCAGACGGTTGTTAATGACGGGTTTATGTTGGGAACCTTCATTCTGTAACCTTGATAGACTTATTTTAGCCGCCGGGCGTGCAACTTTATCGTTGGGAACCTTCATTCTGTAACCTTGATAGACTTATGTTCCATCATGGACAGGCCGTTATGAAGTTGGGAACCTTCATTCTGTAACCTTGATAGAC # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGGGAACCTTCATTCTGTAACCTTGATAGACTTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 3 187681-188349 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI518041.1 Rothia aeria F0184 Scaffold213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================== ================== 187681 36 100.0 28 .................................... TGTGGCAGGGTCCTGAGGTGGACCCGTT 187745 36 100.0 28 .................................... AGGTTCAGACCGTGCCCGATGGATGCGG 187809 36 100.0 28 .................................... ACGCCTCAGTCATATTGGCTGCTTCCAC 187873 36 100.0 28 .................................... TACGGGTTAGGCGGGCCGCCGCTAGCGT 187937 36 100.0 28 .................................... TATAATCCGACGGGAACGAACCAGAGAG 188001 36 77.8 85 ............................NNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 188122 36 80.6 28 NNNNNNN............................. CGCTCTTGAACTAAATCCCTCAGTACGT 188186 36 100.0 28 .................................... TCGCCCGCGCTGATTGGGTCAGTGACCG 188250 36 100.0 28 .................................... TATGCGACGAGCTGTGAGACGATCTCGA 188314 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================================================================== ================== 10 36 95.8 34 TAAGTCTATCAAGGCTACAGAATGAAGGTTCCCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAGGCTACAGAATGAAGGTTCCCAACTACTAGACGACCAAGGCGAAGCACCCCAATAAGTCTATCAAGGTTACAGAATGAAGGTTCCCAACGGTGATTTTTTCTAGTTTCCCACCTGAATAAGTCTATCAAGGTTACAGAATGAAGGTTCCCAACCTTCGGCTAGTGTCCACTGGGTGCGTGATAAGTCTATCAAGGTTACAGAATGAAGGTTCCCAACCAGAGGCAACCGGCTTGAGCGTCCCCGTTAAGTCTATCAAGGCTACAGAATGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAGGCTACAGAATGAAGGTTCCCAACGGGGTAATGGCCTTGCTGGGTAACGCAT # Right flank : CACGCGCTAGAGAAATTACCCTTAAACACTAAGTCTATCAAGGCTACAGAATGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCAAGGCTACGGAATGAAGGTTCCCAACGAGCGGCCCCGCGGAACCTCAAAAAAGCTAAGTCTATCAAGGCTACAGAATGAAGGTTCCCAACTGTTTCTTGGTCTGGGGTGGTGCGGGTGTAAGTCTATCAAGGCTGCAGAATGAAGGTTCCCAACATATCACTGCCGCCCGGCTCGAACAATTTAAGTCTATCAAGGCTACAGAATGAAGGTTCCCAACTGCTGAATGCTTTACAGTCTGCGGCGAATAAGTCTATCAAGGCTACGGAATGAAGGTTCCCAACCCACATACGTGGGGATGAGCCAGGCTATCTAAGTTTAGCAAAGCTACTGGAATGAATG # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGTCTATCAAGGCTACAGAATGAAGGTTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 188563-188856 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI518041.1 Rothia aeria F0184 Scaffold213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 188563 36 100.0 28 .................................... TGTTTCTTGGTCTGGGGTGGTGCGGGTG 188627 36 97.2 28 ................G................... ATATCACTGCCGCCCGGCTCGAACAATT 188691 36 100.0 28 .................................... TGCTGAATGCTTTACAGTCTGCGGCGAA 188755 36 97.2 29 ..................G................. CCACATACGTGGGGATGAGCCAGGCTATC 188820 36 75.0 0 .....T..G...A.....G.......T.C.T...CT | T [188838] ========== ====== ====== ====== ==================================== ============================= ================== 5 36 93.9 28 TAAGTCTATCAAGGCTACAGAATGAAGGTTCCCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAAGGCTACAGAATGAAGGTTCCCAACCGCTCTTGAACTAAATCCCTCAGTACGTTAAGTCTATCAAGGCTACAGAATGAAGGTTCCCAACTCGCCCGCGCTGATTGGGTCAGTGACCGTAAGTCTATCAAGGCTACAGAATGAAGGTTCCCAACTATGCGACGAGCTGTGAGACGATCTCGATAAGTCTATCAAGGCTACAGAATGAAGGTTCCCAACACGCGCTAGAGAAATTACCCTTAAACACTAAGTCTATCAAGGCTACAGAATGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCAAGGCTACGGAATGAAGGTTCCCAACGAGCGGCCCCGCGGAACCTCAAAAAAGC # Right flank : TATTGTTGGCTAGAGTGTACAAAGTAGAGGGTTTGGGAAAGTATTCAATAAACACTGCCAGTAAAGTTTCAAAAGGTGTGTTAAATGCGAAACCCGAGCGCCACAACCGTCTGGATGGGTCTCGGATCCACTTCTAACAACTACTGTTGTTAGCATTACTAACAGGATAGAGGGCCGCAGCCATAATATCAAAATCCTAGTTGAAGCCTGGGGAGTAGGAACAGAATATTACCCTGGAAAATATATAAATATAGGGGAGAAGCTTATATCCTATATGCCTCGCCCATATCCACAACAAATGGAACCTGCACTGGGCGTGCAATAAAACTATTTTCTTTGTATTGATAGGGCATGTTTAACCGTCAGCTTCGCGTCTACCGTTTTTTCATGGGCTGCGGGGATAAAAGTAATTTTTTGTGTATTTTCGGTATTCGGTTTGTAAAACCCTGGGAGTTCGCTAAAAATTATGGGTAGAGCATTATTGAGGATGCTTTTGGATG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGTCTATCAAGGCTACAGAATGAAGGTTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //