Array 1 532087-530391 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQCQ01000001.1 Neisseria lactamica strain M37140 M37140_CHA4016A11_cleaned_ctg_2555, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 532086 32 100.0 33 ................................ AGGCTGATGATTAATTTCTTAAAAGACATAGGC 532021 32 100.0 34 ................................ AATAGCCTATAACGAGTATTTCGGTTATCCCTAC 531955 32 100.0 35 ................................ CAGAACTTACGATAGAAACAACGCCCATTCCCGAA 531888 32 100.0 34 ................................ TAAAATTAAACGGGCAATCGCCAAAAATGACGAG 531822 32 100.0 35 ................................ AATATCTGACATCTTCGGCGTTTGAAACATCAAAC 531755 32 100.0 34 ................................ ATATTTCAAATTTAAAACATTACAAACAGTGTTA 531689 32 100.0 35 ................................ GGCAAAGTGAGCAGCAACATTCGGACAGGCCGCAA 531622 32 100.0 34 ................................ CATACCTTGTGGCAATAGCCTTGGCTTGAATAGA 531556 32 100.0 35 ................................ TATCGAACCTATAGACTTCGGTGCGGGCATTGCGG 531489 32 100.0 33 ................................ AGATTATAGGGGGCATAGGTTCAAGTCGGTTAA 531424 32 100.0 33 ................................ GCGCCTAAGCGGGCAAGTTTGCCGACCCCCGCC 531359 32 100.0 34 ................................ CTCGTCGAAATTGACAATGTTAATGCCGTCGACA 531293 32 100.0 33 ................................ TTTCAGAAGCTGATACGCTTCCCAGTTGTCGGC 531228 32 100.0 33 ................................ AAAGAAATAAGAAAAATTAAACAAAGGTTCTAA 531163 32 100.0 36 ................................ ATGACTACATTAGGTCGAACGCAATGCAGTGAATAC 531095 32 100.0 35 ................................ ATAAACGGATAAAGCTGGTCGAACACTTGGCTGTC 531028 32 100.0 39 ................................ GCTGATCCCAACTCTACACACCGCAAACCAGCCTCGGCA 530957 32 100.0 33 ................................ ATCGTCTGTAACCTGCGGTATGGTTATGTCGTC 530892 32 100.0 35 ................................ ACTGAAGAATATAGCCGTTATTTAGATGACCGCAG 530825 32 100.0 35 ................................ AATTCATCCGCCGAGATACGCCTTTCGCACATGGC 530758 32 100.0 34 ................................ AGGTTCAAATACAAGTTTCATAAACTGAACGCTT 530692 32 100.0 34 ................................ TTCAGAGCCGCGCGGAGGTGCGCGAAACGCTCTG 530626 32 100.0 35 ................................ TCTCCACGATTCCAAGCGCGAACGAGACGGCATCA 530559 32 100.0 35 ................................ TATTTATCAAGTATAGTGCACCGAAAACGGCGCAC 530492 32 100.0 38 ................................ TGCCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGG 530422 32 90.6 0 ..........T.G.......A........... | ========== ====== ====== ====== ================================ ======================================= ================== 26 32 99.6 35 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : ATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAGAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTTGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCAGTCGATATATTCAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATTTGGATTGTTCTTTAACAATCAGGATATTTGTAAATGTGGGTATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : GGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATGTCTTTATTAAAAACGGCTTGATATTATCTGCACATATTAATATAATGATAATTATTATTAATCAAACAGGGAAAAAGTAGGGATGTGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGCTGGCAGCCTGTGGCGGTAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCCCCTGCCAAACCTTCTATAGAAATCACGCCGGTCAACCGACCCGCCGTCGGTGCGGCAATGCGGCTGTTGAGACGGAATATTGCAACTTCTGATAAGGATGGCAATGATTTTCCAAATAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //