Array 1 2322050-2320683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYQ010000002.1 Streptomyces sp. BH-SS-21 Contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2322049 30 93.3 31 .........A...................G AGTCGCAGGCGGGGAAGTCGGCGAGACGTAC 2321988 30 93.3 31 .........A...................C CCGCCCTCCCGACCACTGTTTGACCTTCATG 2321927 30 93.3 31 .........A...................G ATCCGTCCCACGGTCGGCTTCTGGTCGGCCA 2321866 30 93.3 31 .........A...................T TGCGACGCGCGGCAGCCCGGTCGACAGAGTG 2321805 30 96.7 31 .........A.................... GGACGGCATCCGCCGCCTGGAGACCTACATC 2321744 30 96.7 31 .........A.................... AGATCCCGTCGGCGATCTGGTCGCTGGAGAT 2321683 30 93.3 31 .........A...................T CGACGAGGTGGTCGGCGAGAGCGCGGGCTTC 2321622 30 93.3 31 .........A...................T GTTCGTGTAGCTCGGATTCGTAGTTGCCAAT 2321561 30 93.3 31 .........A...................T GCTGCGCCAGAGCGAGCACGCCCTGCGGGGT 2321500 30 96.7 31 .............................G CGTCACCTGAGGTGAGCCGCACGGTCGGGAT 2321439 30 100.0 31 .............................. TGCGGGTGACCTGGCAGTCTCCCGGGTTGAA 2321378 30 96.7 31 .............................C ATCCGGAGCAGGCCCGCACCCACGACCGGAC 2321317 30 100.0 31 .............................. ACCCGCCCGTAGAGGGCTACAACGAGGGCGG 2321256 30 96.7 31 .............................C GCGACCAGTCCAGGCAGGCGGCGCGCAGCTC 2321195 30 96.7 31 .............................C ACGCCGGGCCGATGGCGCGCAACGCGTACGA 2321134 30 96.7 31 .............................G CCCCCTCGGCGTCAGCCGGCGCCGCGCCCTG 2321073 30 100.0 31 .............................. AGGAAGACGGCCCCGAGCTGATCCAAGCCCC 2321012 30 100.0 31 .............................. CGGGGCTCCTGGCCCTCGCCCAGCCCGTCAC 2320951 30 93.3 31 ................T............C CGTACCAGCTGGTGAACAGCCGGTCGTTGTA 2320890 30 96.7 31 .............................G TGCCGCCCAGGTCGGCCATGTTCCGGCCGAG 2320829 28 90.0 28 ..............--T............. GTGCGGGGTGGCTGGACTGGCTGGCCAA 2320773 30 90.0 31 ..............TA.............C ACGAGGACTCCGGCACGTACGACGACGAGGG 2320712 30 90.0 0 ..........GA.................G | ========== ====== ====== ====== ============================== =============================== ================== 23 30 95.2 31 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : GACCGCCAGCCACACCGCGAGAAGCCGGGCGTCCTCCTCCCCGCCGGGCAACGCCTCGGCCACCAGAGCCCGCACGTTCGAGGACACCCAGCGATCCCACAACAGCCCGGCCACGGAGCCGCTGTCCTCCATATGGCACCACAGAGGCAACCAGCCCTCGGTGTCCCGATCGTGCTTGGCCCACACGCTCCGCACCGGGCCCGACAACCGCCCGCTCAGCCCCGACCGGAGCTCCCCTCCACCCGTCATCCCTGATGCATACAGCCAAATCGCAGGCCACAACCGGCATACGAGGAAAATCCATTGACCGAGGAAGCCATTCCTGCGCAATCAGCGTGCCCGCACACGACAAGCCGTATCATCCGCCGATGGCTCTTCCACCGGGCAGAGCCCGCTGCACACTACGACCCGAACGAGCCTCTGTTATGACCTGTTTGCCGGAATCGATGAAACTGCTCGGAAACCGAGCGGAGCGACAGTAAAGTCCCAGGTCACGCAGT # Right flank : CGGCGGCCGGCCAAGTCGCGCAATATAGCTCAGCATTGCCGGTTAGGGAAACCGGCGATGCTGCGGATGCTGTGCAGTACGGGACCGTTTGTGGTCCGCAAACTGCAGAGACTTCGAACAAGGATGTATGCGTGCACGATGAAAGGCCCGAGGAGTTCCGGCTAAGGGGAGATCAGACATGGCAGGTGGCGGCGGCGTGTGCCACGGCCGCTGAGGTGGCGGCAGATCCTGACCTGTTTTTTCCGGCTGGAAAGGACGGCGAGCGGATAGGTATAGCAAAGCGGATCTGCTCAACCTGTCCCGTGCAAGGCGCCTGTCTTGAGAGCGCCCTGGAGTCCGGCGATGCCCATGGCATCCGTGGTGGTACGACAGAGGAGGAGCGTGGCGCTGGTGGAGCCCGATTTCAGTTGCGTTGCAATCCTGCACGCGTCGAAGCGGCGCTGTCGGGAAGAGATGTATTTCTCAACAGAGTTGAGCGGAAGGAACTCGTTCGCATCGCG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : CTGCTCCCCACGCACGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2331762-2332217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYQ010000002.1 Streptomyces sp. BH-SS-21 Contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2331762 30 90.0 31 ..........T......A...........C GCGCCTCCGGCGACACCGTCGCGGTGCAGCT 2331823 30 93.3 31 ..............G..............C CGGAGACGCCCTGCTGGGCCGTCGACATGAC 2331884 30 96.7 31 ................G............. ACCTGAAGGAAGCGGCGTCGCAGCTGCGGGA 2331945 30 93.3 31 ...................A.........T GGAACCGGACGTCACCAAGTCCCTCCACGGC 2332006 30 100.0 31 .............................. CGATCCGGTGGAGGGTGTAGCTGAGGATGCG 2332067 30 96.7 31 .....G........................ CCACGACCGGCAGGCCCTGCTCGATGGCGTA 2332128 29 86.7 31 ...........A..........-..C...C GGCTCATGCGGTGACTGGTTGCCCTCGCAGG 2332188 30 76.7 0 ..A...T..G..A.T.....C....C.... | ========== ====== ====== ====== ============================== =============================== ================== 8 30 91.7 31 CTGCTCCCCACGCACGCGGGGATGGACCCG # Left flank : CGGCCACGAAGTCGCCGCCGGACGGAACTACGGTGACGCCGACGAAGCAGTCATCTGGTGACCGTCATCGTCCTCACCAACTGCCCGCCCGGCCTCCGCGGATTCCTGACCCGCTGGCTCCTGGAAATCTCCGCAGGCGTCTTCATCGGCAACCCGTCAGCCAGAATCCGCGACGCCCTGTGGGACGAAGTCCAGCAATACGCCGGCCAAGGCCGCGCCCTACTCGCCCACACCACCAACAACGAACAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCCACCGACCACGAAGGCCTCACCCTCATCCGACGCCCGAACAACAACACCCCACCCCAGAACAGCGAACCCCCACCCGGCTGGAGCAAAGCATCAAAGCGCCGCCGATTCGGCAGAAACTAAATGCAACCAATGCCCAATTCAAGCAAATTGCCAGAGTCAGTGAAAGTACTCAGAAACCGAGCTGGATTACGGTAAACGCGCAGGTCACGGAG # Right flank : GTCGGAATGCGAGCGTGGGTATACGGATCAAGTGCCACCTCCGCCCATACAGTGGTGAGCCGTACGCAGCATCCGCGACCTGTCTCTACAGTTGTCGCTTCGGTCAAAATTTTTCGCACTTTCCGACGAGACGATCAATCTGCTAACCATTTAGAAAACCCAACAGGCAAGGCGTCAGCAACATGCAATCGTCTGACGTATGAAAAGCACCGGACACACCTGCTCCCCTGCCCATCGCACACGGAAGCGTCCGCCAGGCAGGAGCTTAATTTTTCCGTAACCCGAAAATATTTCGAGAATGCACGAATTCCTCGCTAGAGCGGGGATGGCCCCAGGCAGGGCGTCAGTTTCACATACTCCCCGCGCGTGCGGGGATGGCATCGGTTGGCTTGCCGAGGTAGTCGCGAAGGTCTGTTCCACGTGCCCGCAGGGGATGGACTAATCCAGGCGATCCTCGGCAACTGGTTCCCGCACTCATAGGAATGCTTTCGCCCGCGAGT # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3376005-3377131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYQ010000001.1 Streptomyces sp. BH-SS-21 Contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3376005 30 100.0 31 .............................. TGCAGCACAACTACAAGTTGAACTTAAAGCG 3376066 30 96.7 31 .............................A CGCTCGCGGCCCGGGTGGAACGGATGCGGGA 3376127 30 96.7 31 .............................A CCAGGTAGGGCATCTCCCACCGGCCGGTGGA 3376188 30 100.0 31 .............................. CCGCCTCGTAGTCGCGGTGCACGAGGGACGC 3376249 30 100.0 31 .............................. ACGGGGCGCCGAAGGAGGAGAACCCGAATGG 3376310 30 100.0 31 .............................. CGGCCACGATCTGACCGGTCGACGGCATGCC 3376371 30 100.0 31 .............................. ACCCGGACCGGGACTGGCGCTGGCAGGTCTA 3376432 30 96.7 31 .............................A CCGCCATCGCCATCACCGCGATCATCGCCGC 3376493 30 96.7 31 .............................G AAGCCCCGACCATCTTCATCGGGATCACCAC 3376554 30 96.7 31 .............................A GGCCCCGGCCGGCAGCGGCCCGGATCTCCCG 3376615 30 96.7 31 .............................G AGTTGACGAAGGACGAGGCACAGACCCTCCT 3376676 30 100.0 31 .............................. CGATGCTCATGCCGATCCGGTCGGCGATGAC 3376737 30 96.7 31 .............................A TCACGATCCGCGACCTGACGGTCAAGGATCT 3376798 30 96.7 31 .............................G CGCCGAAGATTGCTGCGGGTACCCAGCCGTT 3376859 30 90.0 31 ..A.............A............C ACCCGGTTCCGCCCGGCCCGCGCACACAAGG 3376920 30 96.7 31 .............................G CCCTGCCCTCGCCCATGGGCGGGTACGCCGC 3376981 30 96.7 31 .............................C CGGTACGTCCAGGACGGCCTCCCGGTGCCGT 3377042 30 93.3 31 ................T............G AGGCTGGCGTCCCGGTCGTCATCACCGACGT 3377103 29 80.0 0 ........T.T......A.A...-.C.... | ========== ====== ====== ====== ============================== =============================== ================== 19 30 96.3 31 CTGCTCCCCGCGCATGCGGGGATGGACCCT # Left flank : ATCCAGATCGAACCGCCGATGCCGATCCCGTAGGCAGTCGCAGAGTCGACCACCTTGATCGAGACGACTCTTGAACAAGAGTTGGCGGCTGAGGCGGGGGTCGTGTAGGGAAAAAGTGGCCCGATGTGACGTGTGCGAGACGCTAATCAGTCGACGTAGCGCTGAGCGTGTGGTGTGTTCGACGCTCCTGTGATTCACCACTGAAGTCACTGCGATGAGTCGAAGTTTCCCTGCCTGCGTGAATACCCGTCATCTCTCATACAGCCAAAGCGCGTGCCACAACCGGCATACGAGGTTAGTGCGTTGGCCGAGGAAGCCATTCCTGCGCAGTCAGCGTGGCAGTACACGACAAGCCGTATCATCCGCCGATGGTTCTGCCACCCGGCAGAGCCCGCTGCATACTGCGACGTGAGCGAGAATCCGTTATGGCCTGTTTGTCGGAATCGATGAAACTGCTCGGAAACCGAGCGGAGCGACGGTAAAGTCCCAGGTCACGCAGT # Right flank : TCACCAGAGTCCGCCGAGCGGGCCAGGAGGCTTCATGCAGTCTCGTCGGGAACCCGTCGCGGCGGCCCCCACTTGTCAGACACGACTGGTAGACATACCACTGGCCATCCTGAATCAGGCCTGTAGAATTGATTCAAGAAGGAGGTGCTTTGTGGATCTACAGCTTGTGGGGGAGCGGATCCGCCGCGAACGTGAGCATGCTGGACTGAGCCAGCGTGATCTTGCTGCTCGCGCACACCTCTCCCAACCAACCTTGACCCGCATCGAGACTGGTGCCCGTGCCAATGTGACCCTTGCTGAACTGGATCGTCTCGCAGTCGCTCTGGATATTCCTGTGCGGCTGCTGACCTGCGGAAATCCTGTGCGAAGCAGAGTTCGGATCGCCGTGAGGATCAACGACGTCACAACGGGAGAGCGTGAAGACGCTCTTCGGCGCACTCTCCAAGTACTGGAGCTCGATGCACGACTGGACGGGCTAGGGCCCTCCACCGCACAGCAGC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3389237-3390853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYQ010000001.1 Streptomyces sp. BH-SS-21 Contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3389237 30 100.0 31 .............................. GCTCCGGGTCCTGCATCGGCTCCAAGACGTT 3389298 30 100.0 32 .............................. TCCGCCGCAGTAGGACGTGTTGTCCTACCTCA 3389360 30 100.0 31 .............................. TCCAGGGCGACGGCGGGAAGGACAAGCCGTC 3389421 30 100.0 31 .............................. ACGAGCACGGCATCGCCGAAGCCAAAGCGAT 3389482 30 96.7 31 .............................G CCCCGCTCGGCTCCTGGGCGCTCGGGGACCG 3389543 30 96.7 31 .............................T CGAATTCGATCAGACCGCAAGGAGCGCCGCA 3389604 30 96.7 31 .............................C CCGCCAGGGCGACCAGGCACTTCGCGCACGT 3389665 30 96.7 31 .............................T CGGGCGCCGTGGCGTACGCGATGGGCCGGGA 3389726 30 100.0 31 .............................. GTCGGGCCGGGTCTCCTGTGTGAGAGGAGAC 3389787 30 96.7 31 .............................G GCACACGGGTGACCGGCGGGAGGCACAGCAG 3389848 30 96.7 31 .............................C GGTAGTCCTCGTGCGCGAACGCCTCGTCGAT 3389909 30 96.7 31 .............................G CGCAGGTCCCCCACCCACCACGCCTCCTCGC 3389970 30 96.7 31 .............................G CACCGCCTTCACGGTGATCGCCTCAGCGAAC 3390031 30 96.7 31 .............................G ACGGCGACGACGTCGCCTACCCGGTATGGAC 3390092 30 96.7 31 .............................T GCACCGCCCAGCCTCCGGCCAGGAACGGGTT 3390153 30 96.7 31 .............................G ATTCGTTGCAGCTGTGTGCGGTGATCGCATG 3390214 30 100.0 31 .............................. TCAGCCCCGTCCTCGATCACGAGACGGAGGT 3390275 30 93.3 31 ............................GC ACATGGGGATCGGGAAGGAACACGCCAAGTC 3390336 30 100.0 31 .............................. TCTGGCCGGGCGCCACAAGCAGACCCGGTTC 3390397 30 96.7 31 .............................T GTGCTGCGTCGATCGCGGCGAAGTGGATGAA 3390458 30 96.7 31 .............................C GGGCCGGGGTCATCGCGGCCACCGCTCCCGT 3390519 30 93.3 31 ............T................G ACGGGGCGGACGTCGTCCAGTTCCCCGAGGC 3390580 30 100.0 31 .............................. TGACGGCGTCCGCGGCGAACACCAAGCAGTC 3390641 30 93.3 31 ..........T..................T TCGCCTCGCGCCCGGGCGCGTGCTCGAAGTC 3390702 30 93.3 31 ..........T..................G ACACACCGCCAGCGGGGACCGCGGCGAAGAA 3390763 30 93.3 31 .....G.......................G GCGCGGTGCACGAGGGCTTGTGCATGTGCGA 3390824 30 86.7 0 ........T.....T.............TG | ========== ====== ====== ====== ============================== ================================ ================== 27 30 96.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : GACCGCCAGCCACACCGCGAGAAGCCGGGCGTCCTCCTCCCCGCCGGGCAACGCCTCGGCCACCAGAGCCCGCACGTTCGAGGACACCCAGCGATCCCACAACAGCCCGGCCACGGAGCCGCTGTCCTCCATATGACACCACAGCGGCAACCAGCCCTCGGTATCCCGATCGTGCTTGGCCCACACGCCCCGCACCGGTCCCGACAACCGCCCGCTCAGCCCCGACCGGAGCTCCCCTCCACCCGTCATCCCTGATGCATACAGCCAAAGTGCAGGCCACAACCGGCATACGAGGAAAATCCATTGACCGAGGAAGCCATTCCTGCGCAATCAGCGTGCCCGCACACGACAAGCCGTACCATCCGCCGATGGCTCTTCCACCGGGTAGAGCCCGCTGCACACTAAGACCTCAACGGTCCTCCGTTATGACCTGTTTGTCCGAATCGATGAAACTGCTCGGAAACCGAGCGGAGCGACGGTAAAGTCCCAGGTCACGCAGC # Right flank : GAGGCAGACATCACAGATTCTGACCAAGCCTTCCAGGGGCTGCGCAGCAAAGACATCCGCCCGCACCGCGTGGCCGGCCAACTCCGCATCACAGCGGGGGAGCTGAAGTACCTGCTCTTCGGGTTGATGATGACTTCCGTCGAAGGAGGCGGCGAGCGCTCCGGCAGCGACAGAGTCGACGGTGTCCTGAAGCTTGTCCGCCGAATACGTGCACTGAATTGCAGGCCGGCGCTCCTTCGCCGCCAGAAGGCTCCGCTCGCCAATCCTGCGACGCCTCACGCGGCGAAAACGCGAGCCCTCGGGTGATCGTGCCCGGGCGAACGCAAGCCCGATCAACGCAGTAGACGGCGGCGTGCCTGTACCGCCCCCGCGTTGCCAAATCCGGCCAGCACACGTGCTGAGAAGAGCCATGGGCTGGCGCCGTCCTCTGAAGGGAGGTCGCTGGGGGCACCTCGCGGCTCTCTGCCACATGCAGTCTCGTCGGATTATCCGGTCGCCAC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3398703-3399891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYQ010000001.1 Streptomyces sp. BH-SS-21 Contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3398703 30 96.7 31 .............................A ACTGGTCGGCGACGGCTTCATCGAGCAGGTG 3398764 30 100.0 31 .............................. CTGAACGCGTTGTTGCGTGAGCGTGCCGCTA 3398825 30 96.7 31 .............................C CATGACCCAGCCCACACGACAGGCCGTCCTC 3398886 30 96.7 31 .............................C CGGAGATCCGAGCGCAGCTCCGGGCCCGGCG 3398947 30 96.7 31 .............................T ACCGTGATGCATGTGCGAGTTACTGTGCAAC 3399008 30 96.7 31 .............................T CGGCGTAGTCGTTCGTGCCGCCGTCGCGGTG 3399069 30 100.0 31 .............................. AGGTGCGCGGCTTTCTCGCGGCGCACACCGC 3399130 30 100.0 31 .............................. ACAACACCGTCGACACCAGCCTGTGGCCCAA 3399191 30 96.7 31 .............................T GCGCCCGGTACAGGCGGGCGTCTCGTACGAC 3399252 30 96.7 31 .............................C ACCGCCCATGAGTAACGCCCCCGCCCCCTAC 3399313 30 100.0 31 .............................. CGACCGACACCGTCGACCCCGACGGGGCGGT 3399374 30 96.7 31 .............................C AGGGCGACGACGCCGTCACCCGCGGCGTGTG 3399435 30 96.7 31 .............................A CCTGCGTGCGCCTGGTCACCACCCGCAACAA 3399496 30 96.7 31 .............................A TCGCCGCCGACGCGCTGGAGTCCGCGGAGTC 3399557 30 96.7 31 .........A.................... CCTCGTCGACATCGGCGACCAGTTCGGCCGA 3399618 30 96.7 31 .............................T TGCTCAGGGACGGCTTCAACGCGGCCAGGCG 3399679 30 90.0 31 ......T.......T..............A CCGACGAGGTCCTGAGCCGGGTGCCGGCGGA 3399740 30 93.3 31 ........T........A............ CGTCACCGCCCCGGCCGACCGCCGCCTTCAG 3399801 30 93.3 31 .......................C.....A AGGCAGGCGGCGTGCAGACGAGCACCCTTAA 3399862 30 83.3 0 ...........A..T..A.A....C..... | ========== ====== ====== ====== ============================== =============================== ================== 20 30 96.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CCTTGACCCGTGTCCCCGCGCTCGCGTTCTGGCGGGGCTATGCCCGCATGCGCCAAGAGCAGCCTGCGGGGGGCCGCCAGGCACCACATGAGCCGGGGTCCATCCCTGCGTGCATGGGGGGCGGAGTCTGAAGCGGGGTCGGCTCGCGCCCGAGGCGGGTCCATCCCCGTATTCGCGGGGAGTAGGGCGGTCTTGGCGGCGATGGGTTCGGTAGGGAGGGTGCATCCCCGCCCGCGTGGGGATCCGTCATCCCTGATGCATGCAGGCAAAGCGCAGGCCGCAACCGGCATATGAGGAAAAAGAATTGACCGAAGAGGCCATTCCTGCGCAATCGGCGTGGCCGCACACGACAAGCCGTATCATCCGCCGATGGCTCTGCCGCCGGCAGGGCTCGCTGCACCCTGCGACCTGAGTGAGCCTCCGTTATGTTCTTTTTGCCGGAATCGATGAAACTGCTCGGAAACCGAGCTGAACGACGTTAAAGTACCAGGTCACGCAGT # Right flank : GTGCCTGGGAAGTCGCGTACGAGCACCTCGCCTTGCCCCCCGCACATGTGGTGGCTGCGCCGTGCCTGCTCCTGGCGTACCGCCTACGCCCTCTGATCCCCTCGGCCGGACCTCGCCGAAGAACTGACGACCTGGGGAGTCCCTCCTCGCCTACACGATTCAGCCGCCTACTTCCAAGTGCGGGGTTCCATCACCTCTCGGCCCCTCGCGCCAAGTCGATGACCTCTGTGTATCTACTCACAAGCCCATGATGATCGTGCACCGACAGTAGAAGGCCGAAAAGACAATCACGCTCTGACAACAGGTCCTAGGAGCGAGAAGTGCTTCGGCGCCGACCGGGATGCGCTACTCCTGGAGGATCGGACCCTTGTGACAGTTGCTTGGTCATGGTGCCGTTGTTTCTGGTTGCGTGAGGTGGGGCGGGTAGCCCTTGGCCCGAAGGTAGGTGTCGAGGGCGAGGGCGACGATGTCGCCGTGGGGGATGCCGGAGTCGGCGTTGT # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4393891-4393250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYQ010000001.1 Streptomyces sp. BH-SS-21 Contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4393890 29 100.0 32 ............................. TCGCCGAGCGCTTCGAACTGCGCCGCCACGTC 4393829 29 100.0 32 ............................. GAGCCGCAGGTGACCACCAGCGATACCGCCAC 4393768 29 100.0 32 ............................. AGTCAGCCGTCCGACGCGGCGTCGGCGACCGC 4393707 29 96.6 32 ..............A.............. TGACCTTGTCCCGGCGGTGGGCACGGCGACCG 4393646 29 100.0 32 ............................. ATCACGTGCATCACGCGGGCGTAGTGCTGCGC 4393585 29 96.6 32 ..T.......................... GGCTACCCGGGAACCGCAGGCGCGCTCCACGA 4393524 29 96.6 32 ..............C.............. GACGGAGCCGTCCGTCTCTTCCGCGGATTGAA 4393463 29 89.7 32 .......T.....TC.............. TGGCTGTGGCAGAAGGCCATCAAGCCTGCCTG 4393402 29 93.1 32 ......................CC..... TCCCGCAGAACCTGCACGCGCGCTACCGCCGA 4393341 29 89.7 32 ...................A...C....A CAGGACAAGGGCGCATTGACCGACAGACTGCA 4393280 29 82.8 0 ..T.......T..G.C.......T..... | AC [4393261] ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.0 32 GTCGACCCCGCGCCTGCGGGGATGCTCCG # Left flank : GCTGCCCGGCACCTCGTACAGCGTCCTACCGGGGAAGGGCCTCGGTCAGTGCGAGTGGGTGGAGGGCGTGAGGCGGTTGCCGGTGACGATGCCGGCGAGGACGAGCCGGTCGGTACTTTGTTCGGGGCGATCACCTGGTGTCAGCCAGCGGTCGGGCTCTGCGGTAACCGTTCGTGCTGCCGGTCAGAAAGTGGCACCAGCGGCCAACACTGCCCTGTACGTTGCTACTTCATGGCGACGTCTACTGGCCGTGGCTGCAGGCTGAGTTGTCCTGGATGGGGCCGGTGCGTTCCGGGAGCTGCTGCGATAGACCGGTTCGACCTGCTGACTTGTGTGAATAACCTTTCGTTTGTTCCACGCTTGTGCGTTTTGATGCGGGCCGAAGTCCCAGGGCGCCCACTGCTCGTCGTCGCTGTCGTCGGGAATTGCTCCTTCATGCCGAGAGAAAACAAGTGAATGAAAACAGCTACCCGGCCCGGTAAAGTCCCAGCTCAGCAAGT # Right flank : AATTTCGCGCTCACCAGGTCGACTGCCGTGGGATGGGGCCGTCACCACTGGGCTGCGCGACGTCATCGAGCAGTACAGCGCCGTCTGGTTCCCTGGCGCCTGGACCGCATCGGTGCCCGGCCGCGGGGTGGCCCACGCCGCGGCCCCGTCTCACGCCGTAGCGGTCGCCCGAAGTGATACCCGCGCTCGCTGAGCCGCGCTCGCAATGCTTCGGCTTCGGCGTTCCGCCTTTCGCCAACAGGAGTCCTACCTGTGATGACCCGCATCAGGTCGTGGCCGAGTGCCCCTGGCTCGCCGCTTCTATGGACGGAATGACCGGCGGAAGCGATGCACGCACCGTAACGACGGAGGGTCTCCGCGCCGGGGGAGCTCAGCACAGAGACCTCGTTGCGTACCGCCCGTCAGGGCTCGTGTTCAGTTACCCCTCCGGGCCTGAACGAGCAGCGTGCCCTGCCTGCCGGGTTCCGGGTGAAGGAGTACCTGAGCACTGATGTCGGCGA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCTGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4416657-4415035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYQ010000001.1 Streptomyces sp. BH-SS-21 Contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 4416656 29 100.0 32 ............................. GCCACTCACGGACCGATCCCCTCACAGGGCTC 4416595 29 100.0 32 ............................. GGCGTGCCCCTGACCACGGGCACGGTGACGAA 4416534 29 96.6 32 ............................C GCACGGATCCGTCCGATGACGATGACCGCGTT 4416473 29 100.0 32 ............................. AGCGCAGATCAGTCGGCGCTACCTCAGCCACA 4416412 29 100.0 32 ............................. TATGAGCGGAGGTTCTCGTAGGGGACGAGAGC 4416351 29 100.0 32 ............................. ATCAGTCCGGGGTCTTTCGCCGCGTCGGCGCG 4416290 29 100.0 32 ............................. CCGAGGAACTCCTGGAGCTGGTCGCCGACTAC 4416229 29 96.6 32 ............................T GAAGGTTTCCAGGTTTCCGGTCGAGTGGGAAA 4416168 29 100.0 32 ............................. GAGAACGTCTGTGTACTCCCTGACCCCCGGCT 4416107 29 100.0 32 ............................. GTGAGCTTCAGATGCTCTGCGGTACGGGACAC G [4416086] 4416045 29 100.0 38 ............................. CCGACGCGAGGGATTCTCGCCTGTTGAGACCGGTCGAC 4415978 29 86.2 32 CC..CG....................... GCCGCACCCTCCCCACCTACAACGGCGGCTCC 4415917 29 93.1 32 ..........................G.T GTTCAGAGGGTGCTGGTAGCCGGGCGCCCCGT 4415856 29 100.0 32 ............................. AGGCCGGCCGCCCCGCTCCCTCACCCCTTCGA 4415795 29 100.0 33 ............................. CGAGCCACATGGGCACCGAAAGCACCACAAAAC 4415733 29 100.0 32 ............................. ACGAGATCGGCGTACGCGCCGTCTTCGGCACA 4415672 29 96.6 32 ...........C................. TTCCACATCGCCTTGTCGGTCGCCGCAGGGGA 4415611 29 96.6 30 ............................T GGGGCAGCTGTACGGGCATGCGGAGGGGGC 4415552 29 93.1 32 ....T.......................C GCCTCGGTGGTGTGCCACCCGGCCTCGCTCAG 4415491 29 96.6 32 ............................T CGACGTGGGCCGCGATCCAGCGGCATCACGGC 4415430 29 100.0 32 ............................. AGCGGTCAGCATCAGCCGCTTGTCGCCTGCTC 4415369 29 96.6 32 .................A........... GCGGCGGCGGACACCGCCACGGACGCCGACTC 4415308 29 100.0 32 ............................. AGAGATAACAGCAGGTCAGACCTGCTTTTGCC A [4415300] 4415246 29 89.7 32 ........T.A.......C.......... ACACACGCGGCAGTCCACAAGCTCGCGCAGGA 4415185 29 93.1 32 .........T.............T..... CGACCTCGCCATATCCGCCCCACGGCCGGCCA 4415124 29 100.0 32 ............................. AACTACGTCCGTGTCACGTCCACCGTCGCCGG 4415063 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ====================================== ================== 27 29 97.5 32 GTCGACCCCGCGCCCGCGGGGATCCTCCG # Left flank : CCCGAAGGAACGGACTTCGACGACTCTGAGGCCAACCTTTTGTGGGACGAAAACCTCGGCGCCGTCCCGGGCGGCACCAACTACGCCAACCACGCAGACCTGTCAGCACACGGGATGACCGACAACCACATCGCGGTCATCGGACCCGAAATCGACGACACCGAACCCACACCATGACCGTCATCATCCTCATCGCCGCCCCAGAGGGACTGCGAGGACACCTCACCCGCTGGATGGTCGAGGCCAGCGCCGGCGTGTTCGTCGGCAACCCAAGCCGCCGCATCCGCGACCGCCTGTGGGAACTCCTGGCGACCCGCATCGGCGACGGCCAAGCCATCCTTATTGAACCCGCCGCCAACGAACAGGGATGGGCCGTACGCACCGCAGGCCGCGACCGCTGGCAACCCGTCGACTTCGACGGACTGATCCTTTCGGCCCGCCCCCAAAAACAACTAAACGAAAACAGCCGCCCCGCCCGATAAAGCCCCAGCTCAGGAAGT # Right flank : TGGACCGGCTGATGAACGTTGCCAGGGGCGCCGCTGATGCGTCAGCCTGGGGAGGGATCTTCCACCGTCGGGATGCACGGGGACAGCAGTGCCTCCGTGTGCTGAGTGACCATCCCTCGGGCGAGTCTCAGCACGCGCACCTCGTTCTCGTGACCCGGTTCCTCGTCATCGCGAAGGTGGAGGAGCCCGTAGGAACCAGGGGCGACCACCGCCACATGCTCGAACAGTTCGGCAACGTCAGGCGAAGAGCGGTGATTGGAAGAGCCGCCGAGGTGGATAAACGGCTCGCCGTTCATCCACCTGAGATCGAGCAAGTACGGGCTGTCCATCCGGGCGATGCGAAGGCGAAGACCATCGACGATCTGTTGCAGCCGAGGCTCATCGTCCTCATCCGCTGCCGTTCCCCTGACCGTGATCCATCCGTGGTACTCAAACATCCCACGATCGTAGGGAGACGACCTGCTTCACCCGGCCGATGGCAACGGCCCGGCGGATCGGTA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCCGCGGGGATCCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4428559-4427799 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYQ010000001.1 Streptomyces sp. BH-SS-21 Contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4428558 29 100.0 32 ............................. TCGCTGATCTTCCCGCGGATGGTGGAGAAGAT 4428497 29 96.6 32 ............................A GCCTGCCCGAGACGGACCTGCCGATCACGTCC 4428436 29 100.0 32 ............................. TCGATGGAGGTCCACTGCGCGAGGGCCAGCCA 4428375 29 100.0 32 ............................. CGGTTCTACGCCGCACTCAGTGGCGAGGGCTA 4428314 29 100.0 31 ............................. GGGCTCAAGCCGCGTTCGACTCCGGCAAGCG 4428254 29 93.1 32 ...........A................C GTAACGGGGCCCGGCAGATCGCGCAGGCCCAG 4428193 29 100.0 32 ............................. CTGTCCGCGATGCCGGCCGAAACACAGAAGGC 4428132 29 93.1 32 ........T..A................. GGTAACGCGCTGAACATGCCGGAGCACGAGTT 4428071 29 89.7 32 .........A.A................T CCGGCAACTGTGGTGAGCTGTTCGAGGACTCC 4428010 29 96.6 32 ...........A................. CCGGGCCGGCCCTCCGGGACCCCTGACCGGAC 4427949 29 96.6 32 ...........A................. GGCGTGTGGACGATCGGCATGCACACCATCCG 4427888 29 93.1 32 ...........A................C TGGTCAACCAGCGGGGTGACGGGGTGTCCGCA 4427827 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.8 32 GTCGACCCCGCGCCCGCGGGGATGCTCCG # Left flank : GCACTGTCCTGGTACCAAGTGCCGCGCCGCCACGCCGTGAAGCGCCGATGCCATGCCGGGGGAGGCCTACCGCGCGAACGCGCTGTTCGATGCGCACCGTAACGACCCGGAGTTCGGCTAGCGCTTCCTTGCCGACGAAGAACACGATGCCGGGGCCGTGATGGCGGACCGGGATGCCTGGCGCATCTGCGGGGAGAACCTTTGGTGGAGCGTATTCGGCACGAAGCGCGGCAAGGGCAAGACGGCCGGCCCACCGGTGCACGACGACCTCGTCCGCCATGACTTCACTGCAGCAGGCCTCCTGCGATAAACCCGTTCAACCTGCTGACTTGTGTGAATAACCTTTCCGTTGTTCCACGCTTGTGCTTGTCGATGCGGGCTGAAGTCCCAGGGCCCCCGCTGCTCGTCATCGCTGTCGCCGGGAGTTGCTCCTTCATGCCGAGAGAAAGCAACTGAATGAAAACAGCTACCCGGCCCGGTAAAGTCCCAGCTCAGCAAGT # Right flank : GTGCGAAGGCGGAGGAGTTGGCGGCTGCATCCGGATCGGCCGAGCCGACGGCGGCAGGCCCCGGGGGAGAGCGACAGTCTCGGTTCGGCATCTTCCAAGAAGCGTGGGATGTGGCCGACGCTTCACCGATTAGGGCGTTTCTCACGGCTTGGATTGTGCTGGAGTCGATTTGCGACAAGGCGTTCGCGGAGCGCGGAGGTGTGCCTCAGTCTGTAAGAGGAGTGATGCGGCCACCGATCATCGAGAGGCGCATCGCAAGATTGACCGACCTGGGGCTTTCCTCAGGCGCGCTCTCGGTCTCTCAGGATCTGCGCCAGCTACGCAATCGGGCGATACACGGTTTCGATGCAGTGACGCCCGCCGCTGTGCGAGATTTCGTCGAGAGCGCTCGATTCGTGGCGCTTGAAGTCTACGCGTTGCCCAAGACGGCCGACTCTGAGCACACCGAGGACACGGCCGCCTAGGTGACGGAACCTCATAACGAGGAAACGCCCCGCAGG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : GTCGACCCCGCACCCGCGGGGATGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 6998291-6998122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYQ010000001.1 Streptomyces sp. BH-SS-21 Contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 6998290 29 82.8 38 .................T...G..CTT.. GCAGTGCGTCGGCTGCACGCCCGTGGGGGCTGGCCGCG 6998223 29 100.0 44 ............................. GCTCGGCGAGTTTGTCGGGTGCGGGGCGGTGGGGGCTGGTCGCG 6998150 29 79.3 0 GA..................CG.TG.... | ========== ====== ====== ====== ============================= ============================================ ================== 3 29 87.4 42 CCGTTCCCCGCGCCCCTGGGGTGGTGGGG # Left flank : GGACCGTGCGGGCCAGTGGGGGGCGGCCGGTCGAGGACGCGCGGGTGACGCTGCTCGACGCGGCGGGGAACGTGGTGGACACGTTGACCACCGGGGGTGACGGGGCGTTCCGGTTCATCGACCTCTCGTCGGGCGAGTACACGGTGATCGCGGCGGGGTACCCGCCGGTGGCCACGGTTCTCCAGGTGGCGGGGGGCGGACGCACGGAACGCGACCTGCAACTGGGCCACGAGGACGACTGAGGGCGCGCCCTTCTTTGGGGGCGCGGGGAACGGCGCGACCGGCCCCCACCGGCCTGCGACCGACGGTCTGCCTGAGCCCCCCACCCACTCAGGGGCACGGGGAACGGCGTGGCCAGCCCCCACTCACCTAGGGGCGCGGGGAACTGCGCGACCGGCCCCCACCGGCCTGCGGTCGACGGTCTACCTGAGCCCCCACCTACCTAGGGGCGCGGGGAACTGCGCGGCCAGCCCCCACCGGTCCGCAGCCGAAAGATTGCG # Right flank : GCTCGGCGGGTCTATTGGGTGCGGGCCTGCGGGGGCGGTGTGCGCCGGAGGGAATTCGGGGAATGGCGCACATCGCCGTCGGACGCGGACGTACCGTGGTGGGAGTGGTGGCACAGATCTTGCGGACCGTGGGAGAGAGGGCCTGAGCCATGGACCGTGGCACCGAGAGGGCCGACCCTCCGCACGGGGTCGCCGCGGCAGGGCGGATTCCGCTGGCCGTGGTCGTCGTGGACCGCGAAGGACTGGTCTCGCACTGGAGCCGCGGCGCCCGCCGCCTCTTCGGCACCGCGAGGGAAGAAGCCGTGGGCCGCCCCGTCGCCGACCTGCTCCCGGTCTCCGGCGCGCTGCCCGAGGACGACGAGGCCGCCCCCTTCGGCGCGTACGCCGCGTACGACGGACTCGGCCCCGACCTCGAATCCTCCCTGGACGGACGGCTGTTCTACCCGGCCGCGGGCCGCGCACGGCTGACGGCCGCGGACAGCGACCGGATCGACGTCCTG # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.37, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCCCCTGGGGTGGTGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 7662055-7659627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYQ010000001.1 Streptomyces sp. BH-SS-21 Contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 7662054 36 83.8 37 .C..T.....-...T.C.T.................. CCCGACCGCGCCGGGGTTGCACCTGTGGCAGTTCGAA 7661981 37 89.2 35 ...........C...A...TT................ TGCAGCAGGCCCTGACGGGTTGTGGGCTTCAGCCG 7661909 36 78.4 39 ..........TC.A.T...A......-.......G.T AACACCGAGTCCACTGGGATCGATGCGAGCGGCTGGGAT 7661834 37 83.8 36 ..........TCT......A...TG............ TCCAACGCCGCGTCGAAGTGCGACGGCCCGAACTGG 7661761 37 86.5 37 .......C....TG......T...........A.... GGCACAACCGGGGCGGGCAAGTCCCCCATCCTCCAGC 7661687 37 89.2 36 C.............GG......T.............. GACCAGAAAACACCGCACTGGGCCCTGCCCACGTGT 7661614 37 89.2 33 .C.........C......C..............A... ATGGGCAAGCAGGCCGAGGGCGCCGGAAGGCTG 7661544 37 62.2 28 .A....A.G.TC........G...GC.AC.C.A.GT. CGGGATGATGGAGTGGTCAACGAGCACG AA [7661521] Deletion [7661480] 7661476 37 89.2 37 ..........TC..T...........T.......... TCCGGGTGTGGCAGGGGTTCCAGGAGCTGACGCCCCT 7661402 37 75.7 86 ....A...TT.CT...........T.....A...GT. GGCTTCAGCGTCTGGGACACCGCCGAGGACGTGGCGGACCGAGGATCGCAACGACGAACTCGCACTCAAGCTGCGCGAGGAGGCCA A [7661370] 7661277 37 97.3 35 ...A................................. GCCCACGGGTCGTAGGGCAGCGCCTGTGACGCGTA C [7661263] 7661204 37 89.2 36 .C........TC...G..................... ATCTGCCACGCGGGCGGCGGCAGCTCCGGCGGTAAG 7661131 37 86.5 34 ....T..C....T...A....A............... CGGCGCGCCCGGACTTAGTCAGCCCCGCGTACAG 7661056 37 81.1 38 ....G......C...T..C.T.G.............T GTCTGGGTGGAGCTGGCGGATTACGACGAGGTCAAGGG 7660981 37 91.9 37 ...........CT....A................... GGCGGGTACACCGGGCACGGCAACATCATCATCGAGG 7660907 37 100.0 36 ..................................... TTCGAACCGGCCAAGTCGGTCGACAAGGACGGCAAC C [7660893] 7660833 36 89.2 36 ...........C....-.....G........A..... ATGTCCGCGATCAAGTCCGTAGTCCGCTGGCAGAAG 7660761 37 91.9 37 ...........C..G...C.................. TGGCTCACCTCCTCCGCCGCCCCCTACACCCCGGCGT 7660687 37 86.5 37 ...........C..T.A.T.............C.... ATCGACGACGTCGAGAAGACGCACGGCCTGCCGGACG 7660613 37 86.5 36 ...A......TC..T.............T........ GAAATGTCCTGGCAGGGGAACCCTGCGGTGATGGTG 7660540 36 89.2 107 ...........C....-.......T....G....... CACAGTCCGAAGTGGGACAGCACAGCTGTTGCGAACGTGGTGTGCCCTTCGGGGCGATCAAGGATCGCAACACCCCCAGCGGGTGGACGTACCGGGTCGATGAGAGC 7660397 37 89.2 37 .C.........C......A.........C........ CTCAACTGGACCGCGCTGGGGCTGCTGATCAAGCACT 7660323 37 91.9 37 ....T......C..T...................... ATGTAGCTGGCGTCGGCGAAGGTGGCGCCGGCCATGA 7660249 37 91.9 36 ...........C..T........T............. GACCAGTTCCAGGCCCGCTGGGCGGAAACCCACCGG 7660176 37 91.9 36 ...........C....A...........A........ TCCTTGCGCAGCAACGCGTTGAACAGCCCGCGCGGG 7660103 37 94.6 38 ................A................G... GCGCCGATCAGGATGGCGTCGGATTCGGCGCGGACCTG 7660028 37 83.8 35 ..........TC...T.A...........T....G.. AGCGTCGGCGCCCACGCCTCCATGACGGGGTTCTT GC [7660021] 7659954 37 89.2 36 ........G.TC...........T............. CAGTGGATTGGCGACCTCGACGACACCGTCGCCATG A [7659938] 7659880 36 89.2 36 ...........C....-...T..........T..... TTGTCGTTGGTTGGGTTCAGCGTGGTGTGACCCGGC 7659808 37 94.6 36 ...........C.............A........... CGCGCTCTGCGCGGGGCCGCCGGGCGCGGCCATGTG 7659735 37 89.2 35 ...........CT....A..........A........ GGGCACGCCAACACGCTGACGGAGTGGCTGCGCGG 7659663 37 78.4 0 ..........TC..T.......G.T.G...C...T.. | ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 32 37 87.5 40 GTGGCGGTCGCTCTCCGGGGCGACCGAGGATCGCAAC # Left flank : GGCAGGACAACACTCCAAGGACCCCAACGGAGCCACCGGAGAAGTCATCGAAGCGCTGCGAGCAAAGCTGCACTATCCAGAGGTCGCGCACAGAATGCGAATCATCGACAACGAACACTCCGTCGCCGTGGTCGCCATCCGCCCTCACCTCGAAGAAGAAACCCGACAGGCCGCCCAGAAGGCCGTCGACCAGCTCCGCAGCGACCTACCAACGCCAGCGACCTACCGCACCCTGCAGGAACACATGGCATCCATCCCCGAGCGGGAATTGGGACTGGCGATCGACGCCGGCCACGCAATCGAAATCGCCGGTGACCTGCACCACTGGGTCGGCCCCTACCACCCGCAACGGGGCATCGAACCTCCTGCATAACCATTCAGACCACCAAGCAATGCCTCACCAGCACGCTTGCGGAACTGAAACCGCCAGCGGGCCGCCAAAGTGCGGTGATCAGCTTGTAGCAGTGAAATTTCGAGTGTTTGGAAAACCCGAATCCGTC # Right flank : ACCGTGGCCCCGTCGGGCCAGGTGCGGTTGACGACGTGGATGAGCGACATCCCCGATCCGCCGCCCGATGCCAAGTCGCCACGGTTCGCGAAGGGGCAAGGGCATAGGCAGAGGGGAAAGCCTCCCGGCCTTCGGCGTCCGAGCAACAACAACTTGCCGACGTGGTCTAGCGTTTGTCCTTCTAATCCTTGACGACGGGGGCACTCGCGGTGATCGGTCTGAAGGAAGCCATCCAGGCCACGTATGACGAGCTGACGGCTGCGGCAGACGGGGGCGCCCATAACCCCCTGCGCTTTCAGTACAGCAGCATCGAGCTGGAGATGACCATCGCTATGAGCGACTCACGAGAGCGCCAGGGAGGACTGAAGGTCTGGGTCTTGGACGGCTTCCGGAAACGGATTCGCGGCAAGACCTCTACGCACACGGTCCGGGTCACCATCGAGCCGCACACCTCCGCCGGGGGAGAAGTCGCCTACACGGTGCACGAGTGATCACCTTCA # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:-1.5, 6:0.25, 7:-0.31, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCTCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-16.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [46-75] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //