Array 1 42897-43840 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDDF01000022.1 Escherichia coli strain CFYH060 scaffold22.1_size133575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42897 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 42958 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 43019 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 43080 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 43141 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 43202 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 43263 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 43324 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 43385 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 43446 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 43507 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 43568 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 43629 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 43690 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 43751 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 43812 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 71063-72921 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDDF01000022.1 Escherichia coli strain CFYH060 scaffold22.1_size133575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71063 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 71124 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 71185 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 71246 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 71307 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 71368 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 71429 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 71490 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 71551 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 71612 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 71673 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 71734 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 71795 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 71856 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 71917 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 71978 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 72039 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 72100 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 72161 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 72222 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 72283 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 72344 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 72405 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 72466 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 72527 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 72588 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 72649 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 72710 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 72771 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 72832 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 72893 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //