Array 1 270-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJFF01000020.1 Rubrivivax gelatinosus CBS contig19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 269 29 100.0 32 ............................. CGCGATGGCCAGCGCCGCGCGTGCTGGCGCAG 208 29 100.0 32 ............................. ATGATCCGCAACGCGCTGGCGGGTCAGTGCCT 147 29 100.0 32 ............................. TAGGCAAGGCGAGTCGAACAAGAGGTCTATCG CGAGCGGGG [122] 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GGCTGCCCCGCGCGAGCGGGGATGGACCC # Left flank : GCG # Right flank : CTGGCGGGCATGTCGTTCAGGCCGAACCACAGCGGCTGCCCCGCGCGAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTGCCCCGCGCGAGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 3167-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJFF01000021.1 Rubrivivax gelatinosus CBS contig19.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 3166 29 100.0 55 ............................. TTGTCGCCAACGCCGCGGGCGGCGTGCTGACCGGCTGCCCCGCGCGAGCGGACGC 3082 29 100.0 32 ............................. GCGGGCTCAGTCAGACGCAGGTGGGCGAGCTA 3021 29 100.0 32 ............................. AGCCCTTGAGCAAGAGGATGGTTTGTATTTAC 2960 29 100.0 32 ............................. AGCGGCGGCAGCGGCCGGATCCTCGTGAACGG 2899 29 100.0 32 ............................. GTCAGGCATATTGGGGACCGCTCCGCTCATGC 2838 29 100.0 32 ............................. GTACCGGACCAGCGCCCATGCCGCGGGCAGCA 2777 29 100.0 32 ............................. GCGACCGGCGCAGCCGTGAGCTGGTGGCCGGG 2716 29 100.0 32 ............................. CCGCTCGACCGTCCAGCTCTGGGAGTGACCCC 2655 29 96.6 32 ............................G CAGTTCGTCACCGACGTCTGCCGCGTCGCGCA 2594 29 96.6 32 ............................T CGGCCGGGTCACGCCCGGTCGTGGCCAGCGTG 2533 29 96.6 32 ............................T CCGGTTCAACCGATACGGGCGCCCGCTGGGCT 2472 29 100.0 32 ............................. AGGGAGGCGGCGCAGGCGGCGCAGGCGTCCGA 2411 29 100.0 32 ............................. GGCGGCCAAGCGCACCTTCTTGTCAGACACCG 2350 29 100.0 32 ............................. AAGCTGCCTCCCACTGACGACCGCTGGAAAAT 2289 29 75.9 42 ....................CGC.AG.GG GGATGGACCCCTGCGCGACGACATGAGCACGGCGGGCGAGTG 2218 29 96.6 32 ............................G TATCGGCCTGCCCGTCCCACTCGTTGCCGTCC 2157 29 100.0 32 ............................. GCGCGAAGGCGCTGGAGAAACGCGCTGAGCAT 2096 29 75.9 42 ....................CGC.AG.GG GGATGGACCCATGCCGGGCGTGCGGCGGATCACCGAGAGGTC 2025 29 100.0 32 ............................. TGACATCAAGCCAGCCTCTGATGGCACCGTCT 1964 29 100.0 32 ............................. TGGCGCGTTTTCCAAGGTGCGCTGACTTCAGA 1903 29 100.0 32 ............................. CATCAGCGCAAGGTCGCGGAAAAGCTGGAAGA 1842 29 100.0 32 ............................. TCTCCGCACCCGCCGCGCAGCCGCAGCCGGTG 1781 29 100.0 45 ............................. GGCTCGTGATGGGCGCCNGTGATGGGCGCCACGGCGCGGGCCTGG 1707 29 100.0 32 ............................. CAGCGCGCTCAGGCGATCCCTGCGCGTGCAGC 1646 29 100.0 32 ............................. GGCGCCGTGACCTTCACCCCGGCCTAATTGCA 1585 29 100.0 32 ............................. TGGCCTGCTGTCGAATGCTTGGCGCCGATGCT 1524 29 100.0 32 ............................. CATGAATCGCTCCTTTGCGATGGGTGAATGCT CGAGCGC [1508] 1456 29 100.0 32 ............................. GTGATCGAGCCGCCCTGCGGATCGACAAGGTA 1395 29 100.0 32 ............................. TGGCGCCAGTCGGCCGAGTTCTCGATCCTGGC 1334 29 100.0 32 ............................. CTTCGGCTGGCCGCTGGTGGCCGAGCTGGGGT 1273 29 100.0 32 ............................. CAGCCGTCGCCGTCGGGCTTGGTCGGGGTCCA 1212 29 100.0 32 ............................. GGGGCGTCAAGCACCAGCTCGTCGGCGTAGTC 1151 29 100.0 32 ............................. GAGACCGCCGGCCGCTTGCATCTTGGCGATGT 1090 29 100.0 32 ............................. TGGCCGCCGAGATGCGCGGCGGCGGAGGAGAC 1029 29 100.0 32 ............................. CAAACTTCCCGCTTGCTTCCTGGTAGCAATCG 968 29 100.0 32 ............................. ACGGGCTGGAGCCGGCCGTGGCTGCCAGCCTG 907 29 100.0 32 ............................. CAGAAGGTGAGGGCGGCCAGCCCCTTGGCGCC 846 29 100.0 32 ............................. AGCTACCTGGGTGAGATCCCCGAGGTGGTGCC 785 29 100.0 32 ............................. CGGCGCCTGCCTTCGCCACGTGGTCGACTAGA 724 29 100.0 32 ............................. GGATGCGGCGGGTGTTTCATCAGCACGTATAC 663 29 100.0 32 ............................. CTCAGCGGTGCGCAGCGTGTTCGAGCTGGGAG GGCGAGCG [645] 594 29 100.0 32 ............................. CAAGTCGTCTACCAGCCGACCGACGAGGACGC 533 29 100.0 32 ............................. CTCGCGCTCTAGCTGATGCGGCCCATGCGGGC CGAGCGC [517] 465 29 100.0 32 ............................. GCGAGGCTCGCCCATGTCTTTCTCCCGCCCCA 404 29 100.0 32 ............................. GCGGAGCTTTGCAGCGGCCACGCCCTCGATGC 343 29 100.0 32 ............................. CAGCATGGCCAGCGTTTCGTTGTCGTGCGGCA 282 29 100.0 32 ............................. CGCCCCCGATCCCCAGTAGCCCGGCCGCACCC 221 29 100.0 32 ............................. GGCGCTGCGGTGTCGATGACGTCCAGCAGCGC 160 29 96.6 32 ............................G CGGCAAGGGCATCCCCGGCTGGGGGCGCCCCA 99 29 100.0 33 ............................. GCTGCGGCCAGCCGCCGAGCGCCCACGCTGGAG 37 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================= ================== 51 29 98.7 33 GGCTGCCCCGCGCGAGCGGGGATGGACCC # Left flank : TCGCCGCAGCCAAGCGCATCGAGCAGGGAGCCGACGAGACCGTGGACCGGCTGGTGCGGCAGAGCGCGGCCCGGGAGTTCCGCCGCATCGGCCTGGTGCCGCGGATGATCGACGACATCCAGAGTCTTTTCGGGATCGCACGCGATGGCGCTGACGGTGGTGATAACGCGTGACGTGGACGACCGCTATCGCGGTTTCCTTGCGTCGGCAATGCTGGAACTGGCGGCCGGCGTCTATGCCAGCCCGTCGCTGACCAAGGGTGCGCGCGAGCGCGTATGGGGCGTGCTGAAGGACTGGCATGCCCAACTAGGGCGAGGCTCGATCACGCTCGTGTACCCGGACAGACAGGCGGATGGTGGACTGGCCGTGATGCACCTGGGCGAACCGAACCGAACTGTCATTCGCGTCGACGGCGTGCTGCTGACAACCAAGGGTTAACCCTTGCTTGTTTGAACGTTCCTTAATAAATCGACTTTCCGGACAAGAACTTAGGATCTAGA # Right flank : CATCCCGGG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTGCCCCGCGCGAGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 2184-1300 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJFF01000626.1 Rubrivivax gelatinosus CBS contig615.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2183 29 100.0 32 ............................. GGCGCGTCGCTGGCCGCCCGGCGGCTTGCCGC 2122 29 100.0 32 ............................. CGCTATTCGCGCCCGCTTCGTAACGAAAGAAC 2061 29 100.0 32 ............................. TCGTCGTAGATGCCGTTGATCTCGGCCTGCAG G [2044] 1999 29 100.0 32 ............................. CTTCGCAAGCCCCCGGCGATGAAGTACCACCG 1938 29 96.6 32 ............................G TGATGAGGATGCAGCTCGTGGCGCTGTGCACC 1877 29 100.0 32 ............................. GACGCCGGCCAGGTGGCGAGCCTGGCAGATCT 1816 29 100.0 32 ............................. GCGGGCGACATCGTCGCGCTGAACGACCAGGG 1755 29 100.0 32 ............................. GTAGGCGTTGGTGCTCATGGTCAGTTCACCGG 1694 29 96.6 32 ............................G CAGCTCCGCGCGGCCGTCCGCAAGCTGCGCCA 1633 29 100.0 32 ............................. TTGGCCCGCGCGATCTGGTCGTTGATCTCCAA 1572 29 100.0 32 ............................. GACTACGACCGCGTCGCGATGTACGGCATCCC 1511 29 100.0 32 ............................. CTCACCGGCACCGGTTTCTTCGTGCTCGACTT 1450 29 100.0 32 ............................. ACCAAGGCGCTGCACGAAATCATGCAGCGCCA 1389 29 100.0 32 ............................. TGGTGGCACAGCCTGTCGGACACCCGGCCTGT 1328 29 93.1 0 ........................C..T. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GGCTGCCCCGCGCGAGCGGGGATGGACCC # Left flank : CCGCGCGAGCGGGGATGGACCCTACCCCGGCGACCGCCGCAAGGGACAGCGCG # Right flank : ATGCCGCCGTACTGGTGGTAGGCCACTCACCGCCTCTCCCTCAGCCCCGGCAAGCTCTCGCGCCCGGCTGCCGCAGCAACACCCCGGCCGCGCCGGCGACGAGGCCGGCCGCGGAGCCGGTGAGGCAAAGGGAGATGTCCAGGAAGGCGACGTAGGCGCCCATCGCCACGCCGCGTGCCTGCGGGGGCGCGCGCCGCACGGCTTCGACCCCGAAGGCCGGGAACGCCAGCGAGTAGCCAAAGCCGGTCAGCGCCGCGCCAGGCCCGCTCGCAGGCCATGGGCGAGGCCATCCTGGAGGCCACGGCCCGCGTTCTGGCCGAGCGCGGCTATGCCGGCACCAACACCAACCGGGTGGCCGAGCGCGCCGGCGTCAGCGTCGGCTCGGTCTACCAGTACTTCCCGCACAAGGACTCGCTGGTCGCGGCGCTGCACGAGCGCCACGGCGCGCGGATGTACGCCGCCATCGCAGCGGAGCGGCCCGACGGCCTGCGCGGCCACGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTGCCCCGCGCGAGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA //