Array 1 830677-835024 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026531.1 Vibrio cholerae strain FORC_076 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 830677 28 100.0 32 ............................ CTTACGAAAACCACCATGAGAATGATTATTGT 830737 28 100.0 32 ............................ GAGCGCCCCCGCATCCAGGAAGAACTCTGAAT 830797 28 100.0 32 ............................ AGAGGTTAAACCCTCAGCTTGCGGTTAATGCC 830857 28 100.0 32 ............................ TTCTTGGTCTGCTTCTCCCACGTGGTCAGCTT 830917 28 100.0 32 ............................ ATTCAGTACACACGGTTACACCAATAGCTCCA 830977 28 100.0 32 ............................ GCGATTGTGCGGCCTCTTGTTAGCTTTGACCA 831037 28 100.0 32 ............................ ACCAGAAGTCATCACGCTCAAAATCAGGAATC 831097 28 100.0 32 ............................ AAGAATGGTTTTGATTTGGACAAAGACATCCT 831157 28 100.0 32 ............................ GGCAGTGGGTCGAGCCTTACGCCACTATCAAT 831217 28 100.0 32 ............................ GTAAGAAAGAGGTGAGTTTTCACCGAAGCGCT 831277 28 100.0 32 ............................ TTCAACGCCGCGGAAGTAATGCGCTTTAGGCT 831337 28 100.0 32 ............................ TTCAAGGAGAATCTCGTCAATCAACAAGTTGC 831397 28 100.0 32 ............................ TGGCATTAACCGCAAGCTGAGGGTTTAACCTC 831457 28 100.0 32 ............................ ATTGCAGCAGAATCCCAATCTAGCCAGCCTGC 831517 28 100.0 32 ............................ TCAATCCGTTCCAGAATATGGCATGGCGTTTT 831577 28 100.0 32 ............................ AATATGTATTTGAATGAACTGGACAGGTTTGT 831637 28 100.0 32 ............................ TGCATCGAGGGAAGCTGGAAACGGAGACTGGT 831697 28 100.0 32 ............................ AGCACGCGCCATGTCAACGTGGTCAGGGTCAA 831757 28 100.0 32 ............................ GCCAGTTCCGTTTTCCCGCTGCGGGGCGGAAT 831817 28 100.0 32 ............................ TTTTTGGTGATCAACTGGTGACGGTACATAAG 831877 28 100.0 32 ............................ TCATTAGACTGCCAGTGCCAGGGAGTAGGGTT 831937 28 100.0 32 ............................ AATGGCGCAACTCACCAAGATGGTGATAGACA 831997 28 100.0 32 ............................ GAATCCGAGCGCCTGACGGATACCGACGACGG 832057 28 100.0 32 ............................ AGTACACGGTATTGCACTTTGATGCTGGCAAG 832117 28 100.0 32 ............................ AATACTAAAATCGCCGTAAGGGGTTTTTAAAA 832177 28 100.0 32 ............................ TTGTACCGGCATGATTATTTCTCCACTTTCCA 832237 28 100.0 32 ............................ GGTACAAGGTGGAAACGCAATTAACCATGGTC 832297 28 100.0 32 ............................ TTACTTAAAATTTGTTGTTGACAGTGATTGGA 832357 28 100.0 32 ............................ TAGGTTATCTAAGGTAACCTCGTCCCCTACGA 832417 28 100.0 32 ............................ AATTGAATCCATTTGATTTTAAGAGAGAACGA 832477 28 100.0 32 ............................ TGCATCGTCTAGCCCAATACTGCGGACTCCAA 832537 28 100.0 32 ............................ ATATGCTTGACCATTGGCTTACGGAACGCCTC 832597 28 100.0 32 ............................ TAAAGCGAGTGATAGCGAAGCAACCACGCCAC 832657 28 100.0 32 ............................ ATCCATCGCGTAGCCGTCGATGTTCTTTGAAA 832717 28 100.0 32 ............................ ACTGGCGAAAACCAGCCCACTCGTTAGAAGAA 832777 28 100.0 32 ............................ ATAACTACGAAGCGGCTATGCCAACCCATTTG 832837 28 100.0 32 ............................ AGCACAGGAATCGGTTTCCGCGAGTTTGTATT 832897 28 100.0 32 ............................ TTTCTGACTGCCTCACCTAGTTTTTTATGAGC 832957 28 100.0 32 ............................ TGACGGATACGGCGATCTGATTGAAAAGTTAG 833017 28 100.0 32 ............................ GCTAAGACGGTGGCGTTAATCCAGTTCCATGC 833077 28 100.0 32 ............................ ACAAACTGATCGACAGAAAGGACGCATAAAAT 833137 28 100.0 32 ............................ TCATTGATGAAGCCCAGACCTTTTTTCCTCCT 833197 28 100.0 32 ............................ TTTCTCAAGGTGGCCGCGCAGGCAGAGGCAGC 833257 28 100.0 32 ............................ ATTCACGCGAGCAAAGGCGGTAACACGTTCAG 833317 28 96.4 32 ...........T................ AATCGTCTCGTCGTTGGTCATTTGTCGGATGG 833377 28 96.4 32 ...........T................ TCTTGAATGTCGCTTAGGAAATCAATCAGCTC 833437 28 96.4 32 ...........T................ GCGGTGTTATCCTACGGCCTAATGCGTATCGC 833497 28 96.4 32 ...........T................ GTCATCCATCGTAGGAAGATTATCGTTAAACG 833557 28 96.4 32 ...........T................ ATTTGAGCGCCGAGTTTAAACGATAGTTCATA 833617 28 96.4 32 ...........T................ GATCGGTTATGCCGGCAACGCATTTGACTACT 833677 28 96.4 32 ...........T................ TAACGAAAACTTGCGAACATGGGGACATGTAC 833737 28 96.4 32 ...........T................ ACAAAGGAGAAAAGGCGATGAGTAAAGTCACG 833797 28 96.4 32 ...........T................ TAGTAAATGCTTAGATTTAGTTTTGCCACCAA 833857 28 96.4 32 ...........T................ AAGCCGAATCATATTTTGATGATCGCCTAACC 833917 28 96.4 32 ...........T................ TGGCTAATAGAAGAGTCATTTAACCCAGAATA 833977 28 96.4 32 ...........T................ TCTAGTTCTTCTTCTGATAGCTCTGCTAGCTC 834037 28 96.4 32 ...........T................ ACCTAGCGATAATTTTAAGCTGACTTTGTTAT 834097 28 96.4 32 ...........T................ GTGTCGATCTGGCGGCGGTTCAGCGGGTAATC 834157 28 96.4 32 ...........T................ TCAATCGCTTCGCATAGTCCTAGTTCGATAAT 834217 28 96.4 32 ...........T................ ATTATCGCGATGGCTGGCGATAAGATCATCAT 834277 28 96.4 32 ...........T................ ACTCGAATTTTCAAAATAAAAAGGTGCTATAT 834337 28 96.4 32 ...........T................ AGCAGAGTACCGCTTGCGTTAGGAACAGGCGC 834397 28 96.4 32 ...........T................ TATATCAGCAATGCGCTCTCTGACGTCTATAT 834457 28 96.4 32 ...........T................ TTCCCAAAACTCTGCGCGAGCCTTAGCCGCTT 834517 28 96.4 32 ...........T................ TATAAAGGCCACGAACTGACGGTTAACCGCGT 834577 28 96.4 32 ...........T................ TTGCTTTCGGGGTGAACATCAAGCGGCTTCTC 834637 28 96.4 32 ...........T................ GCTTGTAATCGAAATCTTTGCTGACAACGTTC 834697 28 96.4 32 ...........T................ ATCACGCGTAGCCATCCAGCGCTTTACATCGG 834757 28 96.4 32 ...........T................ AGCGTGGCGGGGATCCGTAGTGATAACATCTT 834817 28 96.4 32 ...........T................ GCAATAGAGGATTGCAAGCAATGGAACAAAAC 834877 28 96.4 32 ...........T................ TAGCAACGGCTCGAACTCTAGCCCGTGTTCTT 834937 28 96.4 32 ...........T................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 834997 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 73 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //