Array 1 874559-870520 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033187.3 Xanthomonas oryzae pv. oryzae strain PXO61 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 874558 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 874493 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 874429 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 874363 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 874298 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 874231 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 874166 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 874098 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 874032 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 873966 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 873902 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 873837 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 873770 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 873704 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 873638 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 873572 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 873507 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 873442 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 873376 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 873310 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 873245 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 873179 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 873113 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 873048 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 872982 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 872916 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 872849 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 872784 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 872718 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 872651 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 872584 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 872520 31 100.0 33 ............................... CAGCCCCGGCGTCGGCGGCCGCGTCGAACTCCT 872456 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 872390 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 872323 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 872257 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 872190 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 872124 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 872060 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 871995 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 871930 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 871863 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 871797 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 871731 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 871663 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 871598 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 871533 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 871468 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 871403 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 871337 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 871271 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 871206 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 871141 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 871075 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 871009 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 870945 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 870878 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 870813 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 870747 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 870682 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 870615 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 870550 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 62 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : CCGACCGCAGGCTCTGCCCCTTGCGCGACAAATGGGCGTTGACCGCTTCCAGCATCCGAGCGGCAATGCCGTGGGTTTCCAGCAAACGGCGAAAGTTGAGAATCGTGGTCTCGTCTGGAACGTTATCCAAGCCGCCGAGCTGGGCAAAACGCCGCAGGGTCGGGATCTCGTGCAATGCCTCTTCCATCGCCGGATCGCTCAACGCATACCACTGCTGCAACAGATGAATCCGCAACATCGTCGCCAGCGCGTACGGCTGCCGACCCGGTCGTCCTGACACCGGATAGTGCGGCTCGATCAGGGCAAGCAGTCGCTTCCACGGCACGATGCGCTCCATCTCCGCAAGGAAGATCTCGCGCCGGGTCTGCTTGCGCTTGCCCAGGCCCTCGGCGTCACCGAACGTCAGTTGCATGGATGCCTCCTCATTCCGAACAAATAGTGTCTCGCATTTGTGGTGCGTTGTTCAGAGGTTCCCTAGCATGTCACCAAATCCCGAGCGT # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 877167-875753 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033187.3 Xanthomonas oryzae pv. oryzae strain PXO61 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 877166 31 100.0 35 ............................... AGGAAGCGGTCGCCATTAGGAAGCTGCCGGCGCAG 877100 31 100.0 34 ............................... CTTCTCCGTGGCTGCTGCCACATTGACCGATGCA 877035 31 100.0 35 ............................... TCAGCCACGCTGACGGAGTCATTAAACGTCATGAA 876969 31 100.0 36 ............................... ACCCGGTGCCATAGCCTGGGTCGCAACCACCGGCAG 876902 31 100.0 36 ............................... TTCGCAAATTTCAGCGAGCTTTCGGGCTTGAGGGCG 876835 31 100.0 35 ............................... TTCGTCGTTGTGCTGCTAAAGGTCAGCTGCACCCC 876769 31 100.0 35 ............................... TTAACAATGTACCTGTCATCGCCATCACCGTGGAC 876703 31 100.0 36 ............................... CGCAGGAGGCACTGCCATTGCAACGGGGACTGGCTC 876636 31 100.0 35 ............................... CAGTGTACAGCTGAAGCTTTAGGGTCGTGTGCGTC 876570 31 100.0 35 ............................... TAGACAACCATCCCCGCCTCTGGCCTAGCCATGCA 876504 31 100.0 34 ............................... CGCCGGCACATGGGCGATGGTGAGCCATGAGGTG 876439 31 100.0 33 ............................... TCAAAGGGGATGCCACTCAAAGACCAGCAGGCC 876375 31 100.0 34 ............................... CAGTCGCAACAGATGGATTAGCTGCCGTGATGGC 876310 31 100.0 35 ............................... CGCCCCCAGCTACCAGACATGCTGACGCCACTGAG 876244 31 100.0 35 ............................... TGTCGTGAAATTTGAAAAGGTGCCACCTGGGCCAC 876178 31 100.0 34 ............................... TCAAATACAAGCGCACCTGTTGGGCCAAATACTC 876113 31 100.0 35 ............................... TTCTCTACACGCGCCTCGACCTTGTCGTAGTCCTG 876047 31 100.0 35 ............................... GGGGTCGTCAGTGCACCAGCAGAGCCAGCAGCATC 875981 31 100.0 37 ............................... ACTGGCGACTCAAGCACTTGCAGGAGAGCATGCGCCC 875913 31 100.0 34 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATGT 875848 31 100.0 34 ............................... AAGCCAGCCGCCGACAGTGTAAGGGCAGACCCAC 875783 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 22 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : GTTGAAAACTAGGGAAGGTCTGAACAACCCATCAAACCTCTAAAATTCCAGCTTCTTGCATTTCAATGACTGGAAAAATGCTGAGTCGGGTGCGATTTTTGCAACGTTCTGGCGGTTTTGGCTGCCGCCAGGCAGCATTATCCCCTGGCCGGCAGCAAGTGCCGGCGCACCATCCACAGATTCGACAGCGCAAATAACGTCTGCACCTGTGCGGTGTTCTTGGCCAGGCCGCGATAGCGCACCTTGGTGTAGCCGAACTGCCGCTTGATCACCCGGAATGGGTGCTCCACCTTCGCGCGCACGCTTGCCTTGAAGTGTTCCCAACGTTCTGCCCAAGCACGCGCGCGCTTGTTGCCAATGGCTTGAATCGTGGAGCGCTTGGCGGCAATGAAAAATGCAGCCTCGCAGCTCTGCAACTCGTCGCGTTTTTCCGCACCGGTGTAGCCGCTGTCGCCGAACACGCTGTCTTCCTTGCCGTGCAGCAATGCGTGCGTCACCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //