Array 1 193738-195230 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUH02000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain HIY0226 NODE_4_length_277246_cov_28.563606, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193738 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 193799 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 193860 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 193921 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 193982 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 194043 29 96.6 32 ............................A TGCCATCGCCGAGGGAGGGCCTCCAGATCATC 194104 29 100.0 32 ............................. CTGAATAATTCGCCGTAGGTAGCCAGCGCAAT 194165 29 100.0 32 ............................. CCGTCGCTGACGAACTGACTTTTCTTCATCTC 194226 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 194287 29 96.6 32 ............................A CATTGGGCACCGTACCGTTGCGAATACGTCGC 194348 29 100.0 32 ............................. CCAGTAATCACAGACTTTCTCCGTGTCTTCAC 194409 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 194470 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 194531 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 194593 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 194654 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 194715 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 194776 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 194837 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 194898 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 194959 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 195020 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 195081 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 195142 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 195203 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 211366-212066 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUH02000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain HIY0226 NODE_4_length_277246_cov_28.563606, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 211366 29 100.0 32 ............................. TGTCCAGGCGATTTCCTGGAACCTGGCATTGC 211427 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 211488 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 211549 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 211610 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 211671 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 211732 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 211793 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 211854 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 211915 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 211976 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 212037 29 93.1 0 A...........T................ | A [212063] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCAGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //